Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000801A_C06 KMC000801A_c06
(690 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197561.1| putative protein; protein id: At5g20610.1 [Arab... 50 3e-05
gb|AAO42220.1| unknown protein [Arabidopsis thaliana] 50 3e-05
dbj|BAB89134.1| B1142C05.34 [Oryza sativa (japonica cultivar-gro... 41 0.018
>ref|NP_197561.1| putative protein; protein id: At5g20610.1 [Arabidopsis thaliana]
Length = 1164
Score = 50.1 bits (118), Expect = 3e-05
Identities = 26/45 (57%), Positives = 34/45 (74%), Gaps = 6/45 (13%)
Frame = -3
Query: 229 GMT*EDPPSNTIAQSIGDMSRF------LGLEGASGLRLLDVKDE 113
GM+ ED PS+ AQSIGD+S F +GLEGA+GL+LLD+KD+
Sbjct: 875 GMSDEDAPSDITAQSIGDISAFQGKSGCVGLEGAAGLQLLDIKDD 919
Score = 32.3 bits (72), Expect = 6.3
Identities = 17/38 (44%), Positives = 24/38 (62%)
Frame = -2
Query: 305 EDLALLAMDKVEPLSIYDLKYKSGCWDDVGRSTVKHHS 192
EDLA LAMD++E LS+ L+ +SG D+ S + S
Sbjct: 852 EDLAPLAMDQIEALSLEGLRIQSGMSDEDAPSDITAQS 889
>gb|AAO42220.1| unknown protein [Arabidopsis thaliana]
Length = 464
Score = 50.1 bits (118), Expect = 3e-05
Identities = 26/45 (57%), Positives = 34/45 (74%), Gaps = 6/45 (13%)
Frame = -3
Query: 229 GMT*EDPPSNTIAQSIGDMSRF------LGLEGASGLRLLDVKDE 113
GM+ ED PS+ AQSIGD+S F +GLEGA+GL+LLD+KD+
Sbjct: 175 GMSDEDAPSDITAQSIGDISAFQGKSGCVGLEGAAGLQLLDIKDD 219
Score = 32.3 bits (72), Expect = 6.3
Identities = 17/38 (44%), Positives = 24/38 (62%)
Frame = -2
Query: 305 EDLALLAMDKVEPLSIYDLKYKSGCWDDVGRSTVKHHS 192
EDLA LAMD++E LS+ L+ +SG D+ S + S
Sbjct: 152 EDLAPLAMDQIEALSLEGLRIQSGMSDEDAPSDITAQS 189
>dbj|BAB89134.1| B1142C05.34 [Oryza sativa (japonica cultivar-group)]
gi|21104755|dbj|BAB93343.1| B1131B07.2 [Oryza sativa
(japonica cultivar-group)]
Length = 1153
Score = 40.8 bits (94), Expect = 0.018
Identities = 24/47 (51%), Positives = 28/47 (59%), Gaps = 10/47 (21%)
Frame = -3
Query: 229 GMT*EDPPSNTIAQSIGDMSRF----------LGLEGASGLRLLDVK 119
GM+ ED PSN AQ IG+ S LGLEG +GL+LLDVK
Sbjct: 847 GMSEEDAPSNISAQPIGEFSSLQGKCAGNTLSLGLEGTAGLQLLDVK 893
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 561,907,995
Number of Sequences: 1393205
Number of extensions: 12179434
Number of successful extensions: 23651
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23644
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31118763720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
