Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000800A_C01 KMC000800A_c01
(647 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA85438.1| similar to RING-H2 finger protein RHA1a (AF07868... 33 2.5
>dbj|BAA85438.1| similar to RING-H2 finger protein RHA1a (AF078683) [Oryza sativa
(japonica cultivar-group)] gi|25553533|dbj|BAC24809.1|
OSJNBa0004I20.4 [Oryza sativa (japonica cultivar-group)]
Length = 224
Score = 33.5 bits (75), Expect = 2.5
Identities = 22/48 (45%), Positives = 24/48 (49%), Gaps = 10/48 (20%)
Frame = +2
Query: 389 TCVCCSRCSHKRTIRVRLHTRCRSP*HRVCL--------RTC--CRSP 502
TC C R HK + +VR RCR HR CL RTC CRSP
Sbjct: 160 TCAVCLRDFHK-SAQVRRAHRCRHVFHRACLDAWAHHGHRTCPLCRSP 206
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 532,890,553
Number of Sequences: 1393205
Number of extensions: 11076539
Number of successful extensions: 20582
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20573
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
