Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000787A_C02 KMC000787A_c02
(610 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188284.1| putative GTP-binding protein; protein id: At3g1... 174 6e-43
ref|NP_179255.1| putative chloroplast outer membrane protein; pr... 174 8e-43
gb|AAM20511.1| putative chloroplast outer membrane protein [Arab... 172 3e-42
gb|AAK43509.1|AC020666_19 putative outer envelope protein [Oryza... 157 1e-37
gb|AAG48839.1|AC084218_9 similar to Arabidopsis thaliana putativ... 124 1e-27
>ref|NP_188284.1| putative GTP-binding protein; protein id: At3g16620.1 [Arabidopsis
thaliana] gi|11994616|dbj|BAB02753.1| chloroplast outer
envelope protein-like [Arabidopsis thaliana]
Length = 1089
Score = 174 bits (442), Expect = 6e-43
Identities = 84/112 (75%), Positives = 98/112 (87%)
Frame = -3
Query: 608 VVSGGAMAGRGDVAYGGSLEAQLRDKDYPLGRSLSTLGLSVMDWHGDLAVGCNVQSQIPV 429
V+SGGAM RGDVAYGG+LEAQ RDKDYPLGR LSTLGLSVMDWHGDLA+G N+QSQ+P+
Sbjct: 973 VMSGGAMTSRGDVAYGGTLEAQFRDKDYPLGRFLSTLGLSVMDWHGDLAIGGNIQSQVPI 1032
Query: 428 GRHTNLIARANLNNRGAGPISIRLNSSEQLQIALVGLYPLIRKLISDAQPWQ 273
GR +NLIARANLNNRGAG +SIR+NSSEQLQ+A+V L PL +KL++ P Q
Sbjct: 1033 GRSSNLIARANLNNRGAGQVSIRVNSSEQLQLAVVALVPLFKKLLTYYSPEQ 1084
>ref|NP_179255.1| putative chloroplast outer membrane protein; protein id: At2g16640.1,
supported by cDNA: gi_20466387 [Arabidopsis thaliana]
gi|25411728|pir||D84542 probable chloroplast outer
membrane protein [imported] - Arabidopsis thaliana
gi|4581108|gb|AAD24598.1| putative chloroplast outer
membrane protein [Arabidopsis thaliana]
Length = 1206
Score = 174 bits (441), Expect = 8e-43
Identities = 84/116 (72%), Positives = 101/116 (86%), Gaps = 1/116 (0%)
Frame = -3
Query: 608 VVSGGAMAGRGDVAYGGSLEAQLRDKDYPLGRSLSTLGLSVMDWHGDLAVGCNVQSQIPV 429
V+SGGAM RGD AYGG+LEAQLRDKDYPLGR L+TLGLSVMDWHGDLA+G N+QSQ+P+
Sbjct: 1091 VMSGGAMTSRGDFAYGGTLEAQLRDKDYPLGRFLTTLGLSVMDWHGDLAIGGNIQSQVPI 1150
Query: 428 GRHTNLIARANLNNRGAGPISIRLNSSEQLQIALVGLYPLIRKLISDAQP-WQFGQ 264
GR +NLIARANLNNRGAG +S+R+NSSEQLQ+A+V + PL +KL+S P Q+GQ
Sbjct: 1151 GRSSNLIARANLNNRGAGQVSVRVNSSEQLQLAMVAIVPLFKKLLSYYYPQTQYGQ 1206
>gb|AAM20511.1| putative chloroplast outer membrane protein [Arabidopsis thaliana]
Length = 1202
Score = 172 bits (436), Expect = 3e-42
Identities = 81/110 (73%), Positives = 97/110 (87%)
Frame = -3
Query: 608 VVSGGAMAGRGDVAYGGSLEAQLRDKDYPLGRSLSTLGLSVMDWHGDLAVGCNVQSQIPV 429
V+SGGAM RGD AYGG+LEAQLRDKDYPLGR L+TLGLSVMDWHGDLA+G N+QSQ+P+
Sbjct: 1091 VMSGGAMTSRGDFAYGGTLEAQLRDKDYPLGRFLTTLGLSVMDWHGDLAIGGNIQSQVPI 1150
Query: 428 GRHTNLIARANLNNRGAGPISIRLNSSEQLQIALVGLYPLIRKLISDAQP 279
GR +NLIARANLNNRGAG +S+R+NSSEQLQ+A+V + PL +KL+S P
Sbjct: 1151 GRSSNLIARANLNNRGAGQVSVRVNSSEQLQLAMVAIVPLFKKLLSYYYP 1200
>gb|AAK43509.1|AC020666_19 putative outer envelope protein [Oryza sativa (japonica
cultivar-group)]
Length = 1008
Score = 157 bits (396), Expect = 1e-37
Identities = 75/108 (69%), Positives = 91/108 (83%), Gaps = 3/108 (2%)
Frame = -3
Query: 608 VVSGGAMAGRGDVAYGGSLEAQLRDKDYPLGRSLSTLGLSVMDWHGDLAVGCNVQSQIPV 429
+VSGGAM+GRGDVAYGG LEA L+DKDYP+GR LST+ LSV+DWHGDLAVGCN+QSQIP
Sbjct: 899 LVSGGAMSGRGDVAYGGRLEATLKDKDYPIGRMLSTIALSVVDWHGDLAVGCNIQSQIPA 958
Query: 428 GRHTNLIARANLNNRGAGPISIRLNSSEQLQIALVGLYPL---IRKLI 294
GR +NLI ANL+N+G G + IRLNSSE L+IAL+ L P+ I+KL+
Sbjct: 959 GRASNLIGHANLSNKGTGQVGIRLNSSEHLEIALIALVPIYQNIKKLL 1006
>gb|AAG48839.1|AC084218_9 similar to Arabidopsis thaliana putative chloroplast outer envelope
86-like protein (AC002330) [Oryza sativa]
Length = 979
Score = 124 bits (311), Expect = 1e-27
Identities = 58/110 (52%), Positives = 82/110 (73%)
Frame = -3
Query: 608 VVSGGAMAGRGDVAYGGSLEAQLRDKDYPLGRSLSTLGLSVMDWHGDLAVGCNVQSQIPV 429
V S GAM +GD AYG +LEA+L+DKDYP+G+SLSTLGLS+M W DLA+G N+QSQ +
Sbjct: 863 VASTGAMRAQGDTAYGANLEARLKDKDYPIGQSLSTLGLSLMKWRRDLALGANLQSQFSI 922
Query: 428 GRHTNLIARANLNNRGAGPISIRLNSSEQLQIALVGLYPLIRKLISDAQP 279
GR + ++ R LNN+ +G I++R ++SEQ+QIAL+GL P+ + +P
Sbjct: 923 GRGSKMVVRLGLNNKLSGQITVRTSTSEQVQIALLGLIPVAASIYRSFRP 972
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 524,641,991
Number of Sequences: 1393205
Number of extensions: 11130161
Number of successful extensions: 28866
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 27268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28805
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
