Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000778A_C01 KMC000778A_c01
(587 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199176.1| unknown protein; protein id: At5g43630.1 [Arabi... 131 6e-30
dbj|BAC03270.1| P0490D09.22 [Oryza sativa (japonica cultivar-gro... 111 8e-24
dbj|BAA13382.2| Similar to Plasmodium falciparum glutamic acid-r... 43 0.003
ref|NP_055953.1| KIAA0252 protein [Homo sapiens] gi|15929205|gb|... 43 0.003
ref|NP_704866.1| hypothetical protein [Plasmodium falciparum 3D7... 34 1.6
>ref|NP_199176.1| unknown protein; protein id: At5g43630.1 [Arabidopsis thaliana]
gi|10178202|dbj|BAB11626.1| gene_id:K9D7.13~unknown
protein [Arabidopsis thaliana] gi|28393193|gb|AAO42027.1|
unknown protein [Arabidopsis thaliana]
gi|28973589|gb|AAO64119.1| unknown protein [Arabidopsis
thaliana]
Length = 831
Score = 131 bits (330), Expect = 6e-30
Identities = 68/124 (54%), Positives = 93/124 (74%), Gaps = 9/124 (7%)
Frame = -2
Query: 586 SRTDILRWINADRSK--LDGFFLRLRLGKWEEGLGGTGYHVAYIN-ETETHSSEQNIRKS 416
SRTD+L+WIN +S L+GFFLRLRLGKWEEGLGGTGY+VA I+ +TE SS ++ KS
Sbjct: 707 SRTDVLKWINTKKSVSGLEGFFLRLRLGKWEEGLGGTGYYVARIDGDTEGQSSRRHSEKS 766
Query: 415 L-SVKMGGIKCMVQTQYISNHDFLEEEIMEWWSTSSEAGVQ-----IPSEEELIKKLKMK 254
L SVK+ G+ C+V++Q+ISN DFLEEE+ WW ++ ++ IPS EEL +K++ +
Sbjct: 767 LISVKVKGVTCLVESQFISNQDFLEEELKAWWQSAGKSARTSGYDGIPSAEELSRKIQQR 826
Query: 253 RMLG 242
+MLG
Sbjct: 827 KMLG 830
>dbj|BAC03270.1| P0490D09.22 [Oryza sativa (japonica cultivar-group)]
Length = 1194
Score = 111 bits (277), Expect = 8e-24
Identities = 54/116 (46%), Positives = 77/116 (65%), Gaps = 2/116 (1%)
Frame = -2
Query: 586 SRTDILRWINAD--RSKLDGFFLRLRLGKWEEGLGGTGYHVAYINETETHSSEQNIRKSL 413
SR+DI+RW+ + + LDGFFLRLR GKWEE LGGTGYHVA IN + L
Sbjct: 1084 SRSDIIRWMRSPVMHTTLDGFFLRLRFGKWEEALGGTGYHVARINGVLD-------KNRL 1136
Query: 412 SVKMGGIKCMVQTQYISNHDFLEEEIMEWWSTSSEAGVQIPSEEELIKKLKMKRML 245
SV + C V ++++SNHDF ++E+ WWS + ++G ++PS+EEL KL+ + +L
Sbjct: 1137 SVTIRNSTCQVDSRFVSNHDFHQDELKAWWSAAMKSGWKLPSQEELNTKLRERELL 1192
>dbj|BAA13382.2| Similar to Plasmodium falciparum glutamic acid-rich protein
precursor (A54514) [Homo sapiens]
Length = 702
Score = 42.7 bits (99), Expect = 0.003
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 8/122 (6%)
Frame = -2
Query: 586 SRTDILRWINAD--RSKLDGFFLRLRLGKWEEGLGGTGYHVAYINET-ETHSSEQ----N 428
SR + RW + + G F+R+ +G Y VA I ET Q
Sbjct: 357 SRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSK---PVYRVAEITGVVETAKVYQLGGTR 413
Query: 427 IRKSLSVKMGGIKCMVQTQYISNHDFLEEEIMEWWSTSSEAGVQIPSEEELIKK-LKMKR 251
K L ++ G + + + +++SN +F E E M+W AG+Q+P+ +E+ KK L +K
Sbjct: 414 TNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKE 473
Query: 250 ML 245
L
Sbjct: 474 AL 475
>ref|NP_055953.1| KIAA0252 protein [Homo sapiens] gi|15929205|gb|AAH15052.1|AAH15052
Unknown (protein for MGC:9613) [Homo sapiens]
Length = 585
Score = 42.7 bits (99), Expect = 0.003
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 8/122 (6%)
Frame = -2
Query: 586 SRTDILRWINAD--RSKLDGFFLRLRLGKWEEGLGGTGYHVAYINET-ETHSSEQ----N 428
SR + RW + + G F+R+ +G Y VA I ET Q
Sbjct: 240 SRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSK---PVYRVAEITGVVETAKVYQLGGTR 296
Query: 427 IRKSLSVKMGGIKCMVQTQYISNHDFLEEEIMEWWSTSSEAGVQIPSEEELIKK-LKMKR 251
K L ++ G + + + +++SN +F E E M+W AG+Q+P+ +E+ KK L +K
Sbjct: 297 TNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKE 356
Query: 250 ML 245
L
Sbjct: 357 AL 358
>ref|NP_704866.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23505229|emb|CAD52009.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1135
Score = 33.9 bits (76), Expect = 1.6
Identities = 24/73 (32%), Positives = 40/73 (53%)
Frame = -3
Query: 228 LSVYISNYHISILFSLFYIRMVGYIQFGEVFLIFSLIIINIFLFLKIYVKNTVIRFKGII 49
L++YI NY I + S F+ + V + +FL+ S+ I+++LK +N +I K I
Sbjct: 341 LNIYIKNYKILDVLSYFFNKFVCSHKKNNMFLMNSMKNNEIYIYLK--NENKIINHKNHI 398
Query: 48 YLFIHHINNSLTF 10
Y + I N+L F
Sbjct: 399 YNY--GIQNNLYF 409
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,239,717
Number of Sequences: 1393205
Number of extensions: 11196938
Number of successful extensions: 34179
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 33184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34148
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
