Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000774A_C01 KMC000774A_c01
(593 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O00844|Y80K_PARPR Hypothetical 80 kDa protein gi|2104852|emb|... 32 6.1
gb|AAF67265.1|AF169324_3 BcbC [Pasteurella multocida] 32 8.0
>sp|O00844|Y80K_PARPR Hypothetical 80 kDa protein gi|2104852|emb|CAA73577.1| hypothetical
protein [Paramecium primaurelia]
Length = 682
Score = 32.0 bits (71), Expect = 6.1
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Frame = +1
Query: 265 SNQIDYLIVNGFTKSMICISGRKPTNIY------LPMRSYFNLQLIS*ISTQLTSANLEQ 426
SN+++ I N F I ++G+K N+Y LP NL + + QL L Q
Sbjct: 608 SNEVEEEIENNFDIESITLNGQKKDNLYKKSQPSLPENKIKNLTTLQSSTRQLKDVQLNQ 667
Query: 427 LQIK 438
+Q K
Sbjct: 668 IQSK 671
>gb|AAF67265.1|AF169324_3 BcbC [Pasteurella multocida]
Length = 1033
Score = 31.6 bits (70), Expect = 8.0
Identities = 27/112 (24%), Positives = 56/112 (49%), Gaps = 6/112 (5%)
Frame = +3
Query: 72 KIYMHRRLNIRKSLCKKVTRSTKVATSLHGRNFPV*RSQISHQI*LSNTTKMKINAKIIF 251
K+ HR++ + + + ++ +A +L +P QI S+ M ++A+ F
Sbjct: 726 KLLKHRKM-YKNLYSRAMWPASHIAAALVKAKYP----QIKWTAEFSDPILMDVSAQQRF 780
Query: 252 ISLP----IKPNRLFDRQRIYKIHDLYFWEKTNQYLPANEIIF--QSAIDFL 389
SLP IK + + + + +L++W + YL A+E+IF Q+ +D++
Sbjct: 781 ESLPLEWLIKQDFIKETDGLSDTQNLFYWCEKLPYLYADELIFTNQNQLDYM 832
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,648,207
Number of Sequences: 1393205
Number of extensions: 10215745
Number of successful extensions: 23472
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23449
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
