Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000756A_C01 KMC000756A_c01
(790 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566309.1| expressed protein; protein id: At3g07480.1, sup... 145 5e-34
gb|ZP_00053067.1| hypothetical protein [Magnetospirillum magneto... 52 8e-06
gb|ZP_00042597.1| hypothetical protein [Magnetococcus sp. MC-1] 50 4e-05
emb|CAD27470.1| putative glucoamylase; similar to S. cerevisiae ... 48 1e-04
gb|AAO52185.1| similar to hypothetical protein [Schizosaccharomy... 48 2e-04
>ref|NP_566309.1| expressed protein; protein id: At3g07480.1, supported by cDNA:
29120., supported by cDNA: gi_14423423, supported by
cDNA: gi_20148368 [Arabidopsis thaliana]
gi|6041858|gb|AAF02167.1|AC009853_27 unknown protein
[Arabidopsis thaliana]
gi|14423424|gb|AAK62394.1|AF386949_1 Unknown protein
[Arabidopsis thaliana] gi|20148369|gb|AAM10075.1|
unknown protein [Arabidopsis thaliana]
gi|21555779|gb|AAM63932.1| unknown [Arabidopsis
thaliana]
Length = 159
Score = 145 bits (367), Expect = 5e-34
Identities = 66/90 (73%), Positives = 81/90 (89%)
Frame = -3
Query: 788 LSGHTVLKALIHKGLVDPDSHRLEEIDACSAHCEVNIAQEWLEKLPPRSYDEEYVLTRNS 609
LSG T+L+AL H GL+DP SHRL++I+ACSA CEV IA+EWLEKLPPR+YDEEYVL R+S
Sbjct: 63 LSGQTLLRALTHTGLIDPASHRLDDIEACSAECEVQIAEEWLEKLPPRTYDEEYVLKRSS 122
Query: 608 RARVLNKHSRLGCQLLLDHDLQGMVVALPE 519
R+R+LNKHSRLGCQ++L +LQGMVVA+PE
Sbjct: 123 RSRILNKHSRLGCQVVLTQELQGMVVAVPE 152
>gb|ZP_00053067.1| hypothetical protein [Magnetospirillum magnetotacticum]
Length = 112
Score = 52.4 bits (124), Expect = 8e-06
Identities = 28/62 (45%), Positives = 39/62 (62%)
Frame = -3
Query: 707 ACSAHCEVNIAQEWLEKLPPRSYDEEYVLTRNSRARVLNKHSRLGCQLLLDHDLQGMVVA 528
ACS C + +A+EW +KL P + DEE +L A L SRLGCQ+++ +L G+VV
Sbjct: 44 ACST-CHIVVAKEWYDKLSPATEDEEDML---DLAFGLTATSRLGCQIIMSKELDGLVVT 99
Query: 527 LP 522
LP
Sbjct: 100 LP 101
>gb|ZP_00042597.1| hypothetical protein [Magnetococcus sp. MC-1]
Length = 118
Score = 50.1 bits (118), Expect = 4e-05
Identities = 26/63 (41%), Positives = 38/63 (60%)
Frame = -3
Query: 707 ACSAHCEVNIAQEWLEKLPPRSYDEEYVLTRNSRARVLNKHSRLGCQLLLDHDLQGMVVA 528
ACS C V + + W +KL + DE+ +L +A L HSRLGCQ+++ L G+VV
Sbjct: 49 ACST-CHVIVDEAWFDKLEEATEDEDDIL---DKAFGLTPHSRLGCQIVMTEALDGLVVT 104
Query: 527 LPE 519
+PE
Sbjct: 105 IPE 107
>emb|CAD27470.1| putative glucoamylase; similar to S. cerevisiae STA1; similar to S.
pombe SPBPJ4664.02 [Schizosaccharomyces pombe]
Length = 800
Score = 48.1 bits (113), Expect = 1e-04
Identities = 36/93 (38%), Positives = 48/93 (50%), Gaps = 15/93 (16%)
Frame = -1
Query: 787 SPATPSSKPSSTRASSTLTPTASKRST---LAPLTARSTS-------PRNGSRSFPQDPT 638
+P TP+ P+ST ++ST P AS ST +PL + STS P G+ + P PT
Sbjct: 299 TPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPT 358
Query: 637 -----TRNTSSPEIPVLGSSTSTPGSVASSSST 554
T +TS+P P SST T S S+ST
Sbjct: 359 VPPTSTSSTSTPPPPASTSSTGTSSSPLLSTST 391
Score = 47.4 bits (111), Expect = 2e-04
Identities = 46/125 (36%), Positives = 57/125 (44%), Gaps = 7/125 (5%)
Frame = -1
Query: 781 ATPSSKPSSTRASSTLTPTASKRSTLAPLTARSTSPRNGSRSFPQDPTTRN----TSSPE 614
+TP + P+ST +SST S ST P+T STS S S P T R TSS
Sbjct: 601 STPITSPNSTSSSST---QVSWNST-TPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTS 656
Query: 613 IPVLGSSTSTPG-SVASSSSTMISKVW--SSLCQNPKPWDTS*GFFNNSIEFGAFIS*LL 443
I SST+T S AS SS+ S V SS P P + F S + +S +
Sbjct: 657 ISTSSSSTATSSTSFASESSSFYSNVTTSSSTVSTPPPTTSFPSTFTTSFITSSSLSSIP 716
Query: 442 NNVIE 428
NN E
Sbjct: 717 NNSTE 721
Score = 43.9 bits (102), Expect = 0.003
Identities = 34/93 (36%), Positives = 45/93 (47%), Gaps = 15/93 (16%)
Frame = -1
Query: 787 SPATPSSKPSSTRASSTLTPTASKRST---LAPLTARSTS-------PRNGSRSFPQDPT 638
+P TP+ P+ST ++S P S ST +PL STS P G+ + P PT
Sbjct: 245 TPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPT 304
Query: 637 -----TRNTSSPEIPVLGSSTSTPGSVASSSST 554
T +TS+P P SST T S S+ST
Sbjct: 305 VPPTSTSSTSTPPPPASTSSTGTSSSPLPSTST 337
Score = 42.0 bits (97), Expect = 0.010
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Frame = -1
Query: 787 SPATPSSKPSSTRASSTLTPTASKRST---LAPLTARSTS-------PRNGSRSFPQDPT 638
+P TP+ P+ST ++ST P AS ST +PL + STS P G+ + P PT
Sbjct: 353 TPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPT 412
Query: 637 TRNTSSPEIPVLGSSTSTPGSVASSSSTMIS 545
TSS P+ ++ +T SV +S+ + S
Sbjct: 413 VPPTSS-STPLTTTNCTTSTSVPYTSTPVTS 442
Score = 38.9 bits (89), Expect = 0.086
Identities = 30/85 (35%), Positives = 44/85 (51%)
Frame = -1
Query: 787 SPATPSSKPSSTRASSTLTPTASKRSTLAPLTARSTSPRNGSRSFPQDPTTRNTSSPEIP 608
S +T S+ P +T ST T + S+L+ + ST + S S + T +TSS
Sbjct: 685 SSSTVSTPPPTTSFPSTFTTSFITSSSLSSIPNNSTEVKTASTSSGTEIKTASTSS---- 740
Query: 607 VLGSSTSTPGSVASSSSTMISKVWS 533
GSS+S+ + ASS+ST S V S
Sbjct: 741 --GSSSSSSYTPASSTSTTTSSVSS 763
Score = 38.5 bits (88), Expect = 0.11
Identities = 35/95 (36%), Positives = 44/95 (45%), Gaps = 17/95 (17%)
Frame = -1
Query: 787 SPATPSSKPSSTRASSTLTPTASKRST---LAPLTARSTS-------PRNGSRSF--PQD 644
+P TP+ P+ST ++S P S ST +PL STS P GS S P
Sbjct: 189 TPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPIT 248
Query: 643 PT-----TRNTSSPEIPVLGSSTSTPGSVASSSST 554
PT T +TS P P SST T S ++ST
Sbjct: 249 PTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST 283
Score = 35.4 bits (80), Expect = 0.95
Identities = 33/104 (31%), Positives = 46/104 (43%), Gaps = 8/104 (7%)
Frame = -1
Query: 784 PATPSSKPSSTRASSTLTPTASKRSTLAPLTARSTSPRNGSRSFPQDPTTRNTSSPEIPV 605
P T S ST + T+ PT++ ST P+ STS + + S +T T+S IP
Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTS-STSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPT 237
Query: 604 LGSS--------TSTPGSVASSSSTMISKVWSSLCQNPKPWDTS 497
GSS T P S +S+S + SS N P T+
Sbjct: 238 GGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTT 281
Score = 35.4 bits (80), Expect = 0.95
Identities = 32/94 (34%), Positives = 40/94 (42%), Gaps = 15/94 (15%)
Frame = -1
Query: 790 VSPATPSSKPSSTRASSTLTPTASKRSTLAPLTARSTS--------PRNGSRSF--PQDP 641
++P P + SST T T+S + PL STS P GS S P P
Sbjct: 134 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITP 193
Query: 640 T-----TRNTSSPEIPVLGSSTSTPGSVASSSST 554
T T +TS P P SST T S ++ST
Sbjct: 194 TVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST 227
Score = 34.7 bits (78), Expect = 1.6
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = -1
Query: 775 PSSKPSSTRASSTLTPTASKRSTLAPLTARSTSPRNGSRSFPQDPT---TRNTSSPEIPV 605
P++ S T S+++ PT S P+T S S P PT + +T+S +P
Sbjct: 166 PTTSTSCT-TSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Query: 604 LGSSTSTPGSVASSSSTMIS 545
+S +T S+ + S+ +S
Sbjct: 225 TSTSCTTSTSIPTGGSSSLS 244
Score = 33.1 bits (74), Expect = 4.7
Identities = 27/89 (30%), Positives = 41/89 (45%), Gaps = 8/89 (8%)
Frame = -1
Query: 787 SPATPSSKPSSTRASSTLTPTASKRSTLAPLTARSTSPRNGSRSFPQDPT---TRNTSSP 617
S PS+ S T S+++ PT S P+T S S P PT + +T+S
Sbjct: 105 SSPLPSTSTSCT-TSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSN 163
Query: 616 EIPVLGSSTSTPGSV-----ASSSSTMIS 545
+P +S +T S+ +SS ST I+
Sbjct: 164 PLPTTSTSCTTSTSIPPTGGSSSLSTPIT 192
Score = 33.1 bits (74), Expect = 4.7
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 10/105 (9%)
Frame = -1
Query: 781 ATPSSKPSSTRASSTLTPTASKRSTLAPLTARSTSPRNGSRSFPQDPT---TRNTSSPEI 611
++P S++ +ST PT S P+T S S P PT + +T+S +
Sbjct: 219 SSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPL 278
Query: 610 PVLGSSTSTPGSV--ASSSSTMISKV-----WSSLCQNPKPWDTS 497
P +S +T S+ +S+T ++ SS P P TS
Sbjct: 279 PTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTS 323
Score = 32.7 bits (73), Expect = 6.2
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Frame = -1
Query: 778 TPSSKPSSTRASSTLTPTASKRSTLAPLTARSTS--------PRNGSRSF--PQDPTT-- 635
T +S P T ++S+ + ++ S+ +PL + STS P GS S P PT
Sbjct: 81 TSASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPP 140
Query: 634 RNTSSPEIPVLGSSTST 584
+TSS IP+ +STS+
Sbjct: 141 TSTSSTSIPIPPTSTSS 157
>gb|AAO52185.1| similar to hypothetical protein [Schizosaccharomyces pombe]
[Dictyostelium discoideum]
Length = 657
Score = 47.8 bits (112), Expect = 2e-04
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Frame = -1
Query: 781 ATPSSKPSSTRASSTLTP-TASKRSTLAPLTARSTSPRNGSRSFPQDPTTRNTSSPEI-- 611
++ +S PS++ SST +P TAS ST +P TA +TS + S + T+ +T+SP
Sbjct: 516 SSSTSSPSTSSTSSTTSPSTASTTSTTSPSTASTTSTTSPSTASTTSTTSPSTASPSTSS 575
Query: 610 PVLGSSTSTPGSVASSSSTMIS 545
L SSTS+ ASSSS++ S
Sbjct: 576 TSLTSSTSSTTKTASSSSSLSS 597
Score = 43.5 bits (101), Expect = 0.003
Identities = 32/96 (33%), Positives = 47/96 (48%)
Frame = -1
Query: 784 PATPSSKPSSTRASSTLTPTASKRSTLAPLTARSTSPRNGSRSFPQDPTTRNTSSPEIPV 605
P T SS S+T +SST +P+ S T+ +TSP S + P+T +T+S P
Sbjct: 506 PQTSSS--STTSSSSTSSPSTSS-------TSSTTSPSTASTTSTTSPSTASTTSTTSPS 556
Query: 604 LGSSTSTPGSVASSSSTMISKVWSSLCQNPKPWDTS 497
S+TST +S ST + + SS K +S
Sbjct: 557 TASTTSTTSPSTASPSTSSTSLTSSTSSTTKTASSS 592
Score = 42.7 bits (99), Expect = 0.006
Identities = 33/83 (39%), Positives = 45/83 (53%), Gaps = 5/83 (6%)
Frame = -1
Query: 787 SPATPSSK----PSSTRASSTLTP-TASKRSTLAPLTARSTSPRNGSRSFPQDPTTRNTS 623
SP+T S+ PS+ +ST +P TAS ST +P TA +TS + S + P +T TS
Sbjct: 521 SPSTSSTSSTTSPSTASTTSTTSPSTASTTSTTSPSTASTTSTTSPSTASPSTSSTSLTS 580
Query: 622 SPEIPVLGSSTSTPGSVASSSST 554
S S+T T S +S SST
Sbjct: 581 S-----TSSTTKTASSSSSLSST 598
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 741,026,378
Number of Sequences: 1393205
Number of extensions: 17924139
Number of successful extensions: 81056
Number of sequences better than 10.0: 815
Number of HSP's better than 10.0 without gapping: 64184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77907
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 39495713322
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
