Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000747A_C02 KMC000747A_c02
(779 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201376.1| 2-oxoglutarate dehydrogenase, E1 component; pro... 194 1e-48
pir||T50644 oxoglutarate dehydrogenase (lipoamide) (EC 1.2.4.2) ... 194 1e-48
gb|AAO42889.1| At3g55410 [Arabidopsis thaliana] 192 5e-48
ref|NP_191101.1| 2-oxoglutarate dehydrogenase, E1 subunit - like... 165 6e-40
pir||T05894 probable oxoglutarate dehydrogenase (lipoamide) (EC ... 108 7e-23
>ref|NP_201376.1| 2-oxoglutarate dehydrogenase, E1 component; protein id: At5g65750.1,
supported by cDNA: gi_18389253, supported by cDNA:
gi_20465596 [Arabidopsis thaliana]
gi|10177333|dbj|BAB10682.1| 2-oxoglutarate dehydrogenase,
E1 component [Arabidopsis thaliana]
gi|18389254|gb|AAL67070.1| putative 2-oxoglutarate
dehydrogenase E1 component [Arabidopsis thaliana]
gi|20465597|gb|AAM20281.1| putative 2-oxoglutarate
dehydrogenase E1 component [Arabidopsis thaliana]
Length = 1025
Score = 194 bits (493), Expect = 1e-48
Identities = 88/121 (72%), Positives = 104/121 (85%)
Frame = -3
Query: 777 LCSGKVYYELDDHRTKVDGKDVAICRVEQLCPFPYDLVQRELKRYPNAEVVWCQEEPMNM 598
LCSGKVYYELD+ R K + KDVAICRVEQLCPFPYDL+QRELKRYPNAE+VWCQEEPMNM
Sbjct: 900 LCSGKVYYELDEERKKSETKDVAICRVEQLCPFPYDLIQRELKRYPNAEIVWCQEEPMNM 959
Query: 597 GGYTYILPRLISSMKAVGRGGYEDVKYVGRAPSAATATGFLKVHQKEQAEIAEKALQREP 418
GGY YI RL ++MKA+ RG + D+KYVGR PSAATATGF ++H KEQ ++ +KALQ +P
Sbjct: 960 GGYQYIALRLCTAMKALQRGNFNDIKYVGRLPSAATATGFYQLHVKEQTDLVKKALQPDP 1019
Query: 417 L 415
+
Sbjct: 1020 I 1020
>pir||T50644 oxoglutarate dehydrogenase (lipoamide) (EC 1.2.4.2) E1 chain
[imported] - Arabidopsis thaliana
gi|4210330|emb|CAA11552.1| 2-oxoglutarate dehydrogenase,
E1 subunit [Arabidopsis thaliana]
Length = 1027
Score = 194 bits (493), Expect = 1e-48
Identities = 88/121 (72%), Positives = 104/121 (85%)
Frame = -3
Query: 777 LCSGKVYYELDDHRTKVDGKDVAICRVEQLCPFPYDLVQRELKRYPNAEVVWCQEEPMNM 598
LCSGKVYYELD+ R K + KDVAICRVEQLCPFPYDL+QRELKRYPNAE+VWCQEEPMNM
Sbjct: 902 LCSGKVYYELDEERKKSETKDVAICRVEQLCPFPYDLIQRELKRYPNAEIVWCQEEPMNM 961
Query: 597 GGYTYILPRLISSMKAVGRGGYEDVKYVGRAPSAATATGFLKVHQKEQAEIAEKALQREP 418
GGY YI RL ++MKA+ RG + D+KYVGR PSAATATGF ++H KEQ ++ +KALQ +P
Sbjct: 962 GGYQYIALRLCTAMKALQRGNFNDIKYVGRLPSAATATGFYQLHVKEQTDLVKKALQPDP 1021
Query: 417 L 415
+
Sbjct: 1022 I 1022
>gb|AAO42889.1| At3g55410 [Arabidopsis thaliana]
Length = 1017
Score = 192 bits (488), Expect = 5e-48
Identities = 88/122 (72%), Positives = 102/122 (83%)
Frame = -3
Query: 777 LCSGKVYYELDDHRTKVDGKDVAICRVEQLCPFPYDLVQRELKRYPNAEVVWCQEEPMNM 598
LCSGKVYYELDD R KV DVAICRVEQLCPFPYDL+QRELKRYPNAE+VWCQEE MNM
Sbjct: 896 LCSGKVYYELDDERKKVGATDVAICRVEQLCPFPYDLIQRELKRYPNAEIVWCQEEAMNM 955
Query: 597 GGYTYILPRLISSMKAVGRGGYEDVKYVGRAPSAATATGFLKVHQKEQAEIAEKALQREP 418
G ++YI PRL ++M++V RG ED+KYVGR PSAATATGF H KEQA + +KA+ +EP
Sbjct: 956 GAFSYISPRLWTAMRSVNRGDMEDIKYVGRGPSAATATGFYTFHVKEQAGLVQKAIGKEP 1015
Query: 417 LN 412
+N
Sbjct: 1016 IN 1017
>ref|NP_191101.1| 2-oxoglutarate dehydrogenase, E1 subunit - like protein; protein id:
At3g55410.1 [Arabidopsis thaliana]
gi|11252290|pir||T47680 probable oxoglutarate
dehydrogenase (lipoamide) (EC 1.2.4.2) E1 chain -
Arabidopsis thaliana gi|7076784|emb|CAB75899.1|
2-oxoglutarate dehydrogenase, E1 subunit-like protein
[Arabidopsis thaliana]
Length = 1009
Score = 165 bits (418), Expect = 6e-40
Identities = 80/122 (65%), Positives = 94/122 (76%)
Frame = -3
Query: 777 LCSGKVYYELDDHRTKVDGKDVAICRVEQLCPFPYDLVQRELKRYPNAEVVWCQEEPMNM 598
LCSGKVYYELDD R KV DVAICRVEQLCPFPYDL+QRELKRYP +E MNM
Sbjct: 896 LCSGKVYYELDDERKKVGATDVAICRVEQLCPFPYDLIQRELKRYP--------KEAMNM 947
Query: 597 GGYTYILPRLISSMKAVGRGGYEDVKYVGRAPSAATATGFLKVHQKEQAEIAEKALQREP 418
G ++YI PRL ++M++V RG ED+KYVGR PSAATATGF H KEQA + +KA+ +EP
Sbjct: 948 GAFSYISPRLWTAMRSVNRGDMEDIKYVGRGPSAATATGFYTFHVKEQAGLVQKAIGKEP 1007
Query: 417 LN 412
+N
Sbjct: 1008 IN 1009
>pir||T05894 probable oxoglutarate dehydrogenase (lipoamide) (EC 1.2.4.2) -
Arabidopsis thaliana gi|2827711|emb|CAA16684.1|
oxoglutarate dehydrogenase - like protein [Arabidopsis
thaliana]
Length = 973
Score = 108 bits (271), Expect = 7e-23
Identities = 48/75 (64%), Positives = 62/75 (82%)
Frame = -3
Query: 639 NAEVVWCQEEPMNMGGYTYILPRLISSMKAVGRGGYEDVKYVGRAPSAATATGFLKVHQK 460
+AE+VWCQEEPMNMGGY YI RL ++MKA+ RG + D+KYVGR PSAATATGF ++H K
Sbjct: 894 DAEIVWCQEEPMNMGGYQYIALRLCTAMKALQRGNFNDIKYVGRLPSAATATGFYQLHVK 953
Query: 459 EQAEIAEKALQREPL 415
EQ ++ +KALQ +P+
Sbjct: 954 EQTDLVKKALQPDPI 968
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 692,015,838
Number of Sequences: 1393205
Number of extensions: 15977939
Number of successful extensions: 45320
Number of sequences better than 10.0: 167
Number of HSP's better than 10.0 without gapping: 42363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44476
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38655378996
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
