Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000744A_C01 KMC000744A_c01
(824 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C85435 hypothetical protein AT4g36860 [imported] - Arabidop... 121 2e-31
ref|NP_195404.2| putative protein; protein id: At4g36860.1, supp... 121 2e-31
gb|AAL32677.1| Unknown protein [Arabidopsis thaliana] gi|2138714... 119 7e-31
gb|AAL31691.1|AC092390_12 unknown protein, 5' partial [Oryza sat... 105 2e-26
ref|NP_181513.1| hypothetical protein; protein id: At2g39830.1 [... 98 6e-23
>pir||C85435 hypothetical protein AT4g36860 [imported] - Arabidopsis thaliana
gi|4006886|emb|CAB16816.1| putative protein [Arabidopsis
thaliana] gi|7270635|emb|CAB80352.1| putative protein
[Arabidopsis thaliana]
Length = 542
Score = 121 bits (303), Expect(2) = 2e-31
Identities = 60/72 (83%), Positives = 65/72 (89%)
Frame = -2
Query: 724 INPSSSSPSSWSSSKKGKRSDFEKKLGEFFKHQIETDSSSAYGDGFRMGNQAVLKYGLRR 545
I SSSS +SSKKG+RSDFEKKLGEFFKHQIE+DSSSAYGDGFR GNQAVLK+GLRR
Sbjct: 468 IASSSSSAVVSASSKKGERSDFEKKLGEFFKHQIESDSSSAYGDGFRQGNQAVLKHGLRR 527
Query: 544 TLDHIRMTGTFP 509
TLDHIR+TGTFP
Sbjct: 528 TLDHIRLTGTFP 539
Score = 37.0 bits (84), Expect(2) = 2e-31
Identities = 20/30 (66%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Frame = -1
Query: 824 EEGISKVLAHMWLDSEIYSVSG-TDPASSS 738
EEGI +VLAHMWL+SE Y+ S D ASSS
Sbjct: 443 EEGICQVLAHMWLESETYAGSTLVDIASSS 472
>ref|NP_195404.2| putative protein; protein id: At4g36860.1, supported by cDNA:
gi_17065045 [Arabidopsis thaliana]
Length = 351
Score = 121 bits (303), Expect(2) = 2e-31
Identities = 60/72 (83%), Positives = 65/72 (89%)
Frame = -2
Query: 724 INPSSSSPSSWSSSKKGKRSDFEKKLGEFFKHQIETDSSSAYGDGFRMGNQAVLKYGLRR 545
I SSSS +SSKKG+RSDFEKKLGEFFKHQIE+DSSSAYGDGFR GNQAVLK+GLRR
Sbjct: 277 IASSSSSAVVSASSKKGERSDFEKKLGEFFKHQIESDSSSAYGDGFRQGNQAVLKHGLRR 336
Query: 544 TLDHIRMTGTFP 509
TLDHIR+TGTFP
Sbjct: 337 TLDHIRLTGTFP 348
Score = 37.0 bits (84), Expect(2) = 2e-31
Identities = 20/30 (66%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Frame = -1
Query: 824 EEGISKVLAHMWLDSEIYSVSG-TDPASSS 738
EEGI +VLAHMWL+SE Y+ S D ASSS
Sbjct: 252 EEGICQVLAHMWLESETYAGSTLVDIASSS 281
>gb|AAL32677.1| Unknown protein [Arabidopsis thaliana] gi|21387149|gb|AAM47978.1|
unknown protein [Arabidopsis thaliana]
Length = 553
Score = 119 bits (299), Expect(2) = 7e-31
Identities = 59/72 (81%), Positives = 65/72 (89%)
Frame = -2
Query: 724 INPSSSSPSSWSSSKKGKRSDFEKKLGEFFKHQIETDSSSAYGDGFRMGNQAVLKYGLRR 545
I SSSS +SSKKG+RSDFE+KLGEFFKHQIE+DSSSAYGDGFR GNQAVLK+GLRR
Sbjct: 482 IASSSSSAVVSASSKKGERSDFEEKLGEFFKHQIESDSSSAYGDGFRQGNQAVLKHGLRR 541
Query: 544 TLDHIRMTGTFP 509
TLDHIR+TGTFP
Sbjct: 542 TLDHIRLTGTFP 553
Score = 37.0 bits (84), Expect(2) = 7e-31
Identities = 20/30 (66%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Frame = -1
Query: 824 EEGISKVLAHMWLDSEIYSVSG-TDPASSS 738
EEGI +VLAHMWL+SE Y+ S D ASSS
Sbjct: 457 EEGICQVLAHMWLESETYAGSTLVDIASSS 486
>gb|AAL31691.1|AC092390_12 unknown protein, 5' partial [Oryza sativa]
Length = 223
Score = 105 bits (263), Expect(2) = 2e-26
Identities = 51/77 (66%), Positives = 63/77 (81%)
Frame = -2
Query: 739 LSSSSINPSSSSPSSWSSSKKGKRSDFEKKLGEFFKHQIETDSSSAYGDGFRMGNQAVLK 560
++S + + SSSS SS SSKKG ++DFEKKLGEFFKHQIETD S YGDGFR G +AV +
Sbjct: 146 IASIAASSSSSSSSSAPSSKKGVQTDFEKKLGEFFKHQIETDPSDVYGDGFRDGIKAVER 205
Query: 559 YGLRRTLDHIRMTGTFP 509
YGLR+TLDH+++TG FP
Sbjct: 206 YGLRKTLDHMKLTGVFP 222
Score = 35.8 bits (81), Expect(2) = 2e-26
Identities = 18/27 (66%), Positives = 21/27 (77%)
Frame = -1
Query: 824 EEGISKVLAHMWLDSEIYSVSGTDPAS 744
EEGI +VLAHMWL+SEI S S + AS
Sbjct: 122 EEGICQVLAHMWLESEITSGSSSIIAS 148
>ref|NP_181513.1| hypothetical protein; protein id: At2g39830.1 [Arabidopsis
thaliana] gi|7487693|pir||T01013 hypothetical protein
At2g39830 [imported] - Arabidopsis thaliana
gi|2642165|gb|AAB87132.1| hypothetical protein
[Arabidopsis thaliana]
Length = 434
Score = 98.2 bits (243), Expect(2) = 6e-23
Identities = 51/76 (67%), Positives = 58/76 (76%)
Frame = -2
Query: 736 SSSSINPSSSSPSSWSSSKKGKRSDFEKKLGEFFKHQIETDSSSAYGDGFRMGNQAVLKY 557
S+SS+ SSSS S +KKG +S+ EKKLGEFFKHQI D+S AYG GFR N A KY
Sbjct: 361 STSSVATSSSSSFS---NKKGGKSNVEKKLGEFFKHQIAHDASPAYGGGFRAANAAACKY 417
Query: 556 GLRRTLDHIRMTGTFP 509
GLRRTLDHIR+TGTFP
Sbjct: 418 GLRRTLDHIRLTGTFP 433
Score = 32.0 bits (71), Expect(2) = 6e-23
Identities = 16/31 (51%), Positives = 23/31 (73%), Gaps = 2/31 (6%)
Frame = -1
Query: 824 EEGISKVLAHMWLDSEIYSVSGTD--PASSS 738
EEGI +VL++MWL+SE+ S T P++SS
Sbjct: 334 EEGICQVLSYMWLESEVLSDPSTRNLPSTSS 364
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 725,625,630
Number of Sequences: 1393205
Number of extensions: 16534304
Number of successful extensions: 82191
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 61084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75458
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 42857050626
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
