Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000743A_C01 KMC000743A_c01
(762 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO51525.1| similar to Plasmodium falciparum. Hypothetical pr... 33 5.8
gb|AAL01986.1|AF408704_1 I2C-5 [Lycopersicon pimpinellifolium] 32 7.5
pir||T06405 resistance complex protein I2C-3 - tomato (fragment)... 32 7.5
gb|ZP_00109893.1| hypothetical protein [Nostoc punctiforme] 32 9.9
>gb|AAO51525.1| similar to Plasmodium falciparum. Hypothetical protein
[Dictyostelium discoideum]
Length = 509
Score = 32.7 bits (73), Expect = 5.8
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +2
Query: 533 CQIHPSLLIISKLISHSNLP----CAKSYLKSHNVPNISIQRITILPSSNKMLNFSSFMQ 700
C HP+L I+ S N P C S+ +SH + +I+++ L K LNF ++
Sbjct: 8 CVNHPNLDILFLCTSCDNSPICCKCVTSFHRSHTIDDINLENSKQLSKEFKQLNFKELLK 67
>gb|AAL01986.1|AF408704_1 I2C-5 [Lycopersicon pimpinellifolium]
Length = 1297
Score = 32.3 bits (72), Expect = 7.5
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Frame = +2
Query: 401 LTNVQGIN-RNQ*TFSRVSTPGKNTLLQLLSDPNLKKMESCDVIICQIHPSLLIISKL-- 571
LT++Q + RN + + + P + L + + PNL+ + + H ++ L
Sbjct: 1166 LTSLQTLRIRNLQSLAESALPSSLSHLNIYNCPNLQSLSESALPSSLSHLTIYNCPNLQS 1225
Query: 572 ISHSNLPCAKSYLKSHNVPNISIQRITILPSS 667
+S S LP + S+L +N PN+ + LPSS
Sbjct: 1226 LSESALPSSLSHLTIYNCPNLQSLSESALPSS 1257
>pir||T06405 resistance complex protein I2C-3 - tomato (fragment)
gi|2258319|gb|AAB63276.1| resistance complex protein
I2C-3 [Lycopersicon esculentum]
Length = 373
Score = 32.3 bits (72), Expect = 7.5
Identities = 28/96 (29%), Positives = 48/96 (49%), Gaps = 7/96 (7%)
Frame = +2
Query: 401 LTNVQGIN-RNQ*TFSRVSTPGKNTLLQLLSDPNLKKME------SCDVIICQIHPSLLI 559
LT++Q + RN + + ++ P + L +L+ PNL+ + S +I P+L
Sbjct: 219 LTSLQTLQIRNLQSLAALALPSSLSHLTILNFPNLQSLSESALPSSLSHLIIDDCPNL-- 276
Query: 560 ISKLISHSNLPCAKSYLKSHNVPNISIQRITILPSS 667
+ +S S LP + S+L N PN+ + LPSS
Sbjct: 277 --QSLSESALPSSLSHLDISNCPNLQSLSESALPSS 310
>gb|ZP_00109893.1| hypothetical protein [Nostoc punctiforme]
Length = 1318
Score = 32.0 bits (71), Expect = 9.9
Identities = 16/52 (30%), Positives = 25/52 (47%)
Frame = +2
Query: 392 HPFLTNVQGINRNQ*TFSRVSTPGKNTLLQLLSDPNLKKMESCDVIICQIHP 547
H + G+N+N+ F V + G LL+L+SD L + + I HP
Sbjct: 1010 HTRIKGDAGLNKNRIAFVPVGSVGDEELLRLMSDDLLDLLREAKIFISDSHP 1061
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 628,876,343
Number of Sequences: 1393205
Number of extensions: 12656035
Number of successful extensions: 25829
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25818
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 36974710344
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
