Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000739A_C01 KMC000739A_c01
(630 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO41895.1| putative casein kinase [Arabidopsis thaliana] 103 1e-21
ref|NP_197320.1| casein kinase-like protein; protein id: At5g181... 103 1e-21
gb|AAF00624.1|AC009540_1 unknown protein, 5' partial [Arabidopsi... 103 2e-21
gb|AAM91528.1| putative casein kinase [Arabidopsis thaliana] 103 2e-21
ref|NP_187044.1| putative casein kinase; protein id: At3g03940.1... 103 2e-21
>gb|AAO41895.1| putative casein kinase [Arabidopsis thaliana]
Length = 307
Score = 103 bits (258), Expect = 1e-21
Identities = 47/55 (85%), Positives = 53/55 (95%)
Frame = -2
Query: 629 ATNDQPAFILSIPKRKLLDETQETLRTSAFPSTHVKEKWSKNLYIASICYGRTVC 465
AT DQ AFILS+PKRK++DETQETLRT+AFPSTHVKEKW+KNLYIASIC+GRTVC
Sbjct: 253 ATADQAAFILSVPKRKMMDETQETLRTTAFPSTHVKEKWAKNLYIASICFGRTVC 307
>ref|NP_197320.1| casein kinase-like protein; protein id: At5g18190.1 [Arabidopsis
thaliana] gi|9758901|dbj|BAB09477.1| casein kinase-like
protein [Arabidopsis thaliana]
Length = 691
Score = 103 bits (258), Expect = 1e-21
Identities = 47/55 (85%), Positives = 53/55 (95%)
Frame = -2
Query: 629 ATNDQPAFILSIPKRKLLDETQETLRTSAFPSTHVKEKWSKNLYIASICYGRTVC 465
AT DQ AFILS+PKRK++DETQETLRT+AFPSTHVKEKW+KNLYIASIC+GRTVC
Sbjct: 637 ATADQAAFILSVPKRKMMDETQETLRTTAFPSTHVKEKWAKNLYIASICFGRTVC 691
>gb|AAF00624.1|AC009540_1 unknown protein, 5' partial [Arabidopsis thaliana]
Length = 494
Score = 103 bits (257), Expect = 2e-21
Identities = 49/55 (89%), Positives = 51/55 (92%)
Frame = -2
Query: 629 ATNDQPAFILSIPKRKLLDETQETLRTSAFPSTHVKEKWSKNLYIASICYGRTVC 465
AT DQ A ILSIPKRK+ DETQETLRTSAFPSTHVKEKW+KNLYIASICYGRTVC
Sbjct: 440 ATADQAALILSIPKRKITDETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVC 494
>gb|AAM91528.1| putative casein kinase [Arabidopsis thaliana]
Length = 303
Score = 103 bits (257), Expect = 2e-21
Identities = 49/55 (89%), Positives = 51/55 (92%)
Frame = -2
Query: 629 ATNDQPAFILSIPKRKLLDETQETLRTSAFPSTHVKEKWSKNLYIASICYGRTVC 465
AT DQ A ILSIPKRK+ DETQETLRTSAFPSTHVKEKW+KNLYIASICYGRTVC
Sbjct: 249 ATADQAALILSIPKRKITDETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVC 303
>ref|NP_187044.1| putative casein kinase; protein id: At3g03940.1 [Arabidopsis
thaliana] gi|6223639|gb|AAF05853.1|AC011698_4 putative
casein kinase [Arabidopsis thaliana]
Length = 701
Score = 103 bits (257), Expect = 2e-21
Identities = 49/55 (89%), Positives = 51/55 (92%)
Frame = -2
Query: 629 ATNDQPAFILSIPKRKLLDETQETLRTSAFPSTHVKEKWSKNLYIASICYGRTVC 465
AT DQ A ILSIPKRK+ DETQETLRTSAFPSTHVKEKW+KNLYIASICYGRTVC
Sbjct: 647 ATADQAALILSIPKRKITDETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVC 701
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 570,665,889
Number of Sequences: 1393205
Number of extensions: 12884627
Number of successful extensions: 27690
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 27012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27685
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
