Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000738A_C02 KMC000738A_c02
(613 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188015.1| hypothetical protein; protein id: At3g13990.1 [... 127 5e-39
gb|AAM83252.1| AT3g13990/MDC16_11 [Arabidopsis thaliana] gi|2330... 127 5e-39
dbj|BAB02329.1| gb|AAF13084.1~gene_id:MDC16.11~similar to unknow... 127 1e-31
gb|AAO37496.1| unknown protein, 5'-partial [Oryza sativa (japoni... 95 1e-25
gb|AAL68853.1|AF466199_12 gb protein [Sorghum bicolor] 99 6e-20
>ref|NP_188015.1| hypothetical protein; protein id: At3g13990.1 [Arabidopsis thaliana]
Length = 883
Score = 127 bits (319), Expect(2) = 5e-39
Identities = 67/103 (65%), Positives = 78/103 (75%), Gaps = 1/103 (0%)
Frame = -1
Query: 610 GGATTLEDSSRVKYKD-NLYVPNPQAETSEIWLQNPRDHPGVQSTPYYNMPGQTPHGAYM 434
G AT LED SR+ K N+YVPNPQAETSEIW+QNPRD +QS PYYN+ GQ+PHGAY+
Sbjct: 749 GNATGLEDPSRMINKHGNIYVPNPQAETSEIWMQNPRDLSSLQS-PYYNVAGQSPHGAYL 807
Query: 433 ASHTGHASFNAAAAAQSSHMQFPGMYHTPPQPGAMAASPHPFG 305
+SHT H SFN AQSSHMQF G++H P QPG M A+PH G
Sbjct: 808 SSHTAHQSFN--PTAQSSHMQFQGLFH-PSQPGTM-ANPHHMG 846
Score = 55.8 bits (133), Expect(2) = 5e-39
Identities = 22/40 (55%), Positives = 28/40 (70%)
Frame = -2
Query: 312 HLGPAIGNNVGVGVAAAAPGAQVGAYQQPPLGHLNWTTNF 193
H+GP + NVGVGV + P +Q+G YQQ LGH NW +NF
Sbjct: 844 HMGPGLSGNVGVGVVPSPPPSQIGTYQQSQLGHPNWPSNF 883
>gb|AAM83252.1| AT3g13990/MDC16_11 [Arabidopsis thaliana] gi|23308471|gb|AAN18205.1|
At3g13990/MDC16_11 [Arabidopsis thaliana]
Length = 848
Score = 127 bits (319), Expect(2) = 5e-39
Identities = 67/103 (65%), Positives = 78/103 (75%), Gaps = 1/103 (0%)
Frame = -1
Query: 610 GGATTLEDSSRVKYKD-NLYVPNPQAETSEIWLQNPRDHPGVQSTPYYNMPGQTPHGAYM 434
G AT LED SR+ K N+YVPNPQAETSEIW+QNPRD +QS PYYN+ GQ+PHGAY+
Sbjct: 714 GNATGLEDPSRMINKHGNIYVPNPQAETSEIWMQNPRDLSSLQS-PYYNVAGQSPHGAYL 772
Query: 433 ASHTGHASFNAAAAAQSSHMQFPGMYHTPPQPGAMAASPHPFG 305
+SHT H SFN AQSSHMQF G++H P QPG M A+PH G
Sbjct: 773 SSHTAHQSFN--PTAQSSHMQFQGLFH-PSQPGTM-ANPHHMG 811
Score = 55.8 bits (133), Expect(2) = 5e-39
Identities = 22/40 (55%), Positives = 28/40 (70%)
Frame = -2
Query: 312 HLGPAIGNNVGVGVAAAAPGAQVGAYQQPPLGHLNWTTNF 193
H+GP + NVGVGV + P +Q+G YQQ LGH NW +NF
Sbjct: 809 HMGPGLSGNVGVGVVPSPPPSQIGTYQQSQLGHPNWPSNF 848
>dbj|BAB02329.1| gb|AAF13084.1~gene_id:MDC16.11~similar to unknown protein
[Arabidopsis thaliana]
Length = 870
Score = 127 bits (319), Expect(2) = 1e-31
Identities = 67/103 (65%), Positives = 78/103 (75%), Gaps = 1/103 (0%)
Frame = -1
Query: 610 GGATTLEDSSRVKYKD-NLYVPNPQAETSEIWLQNPRDHPGVQSTPYYNMPGQTPHGAYM 434
G AT LED SR+ K N+YVPNPQAETSEIW+QNPRD +QS PYYN+ GQ+PHGAY+
Sbjct: 713 GNATGLEDPSRMINKHGNIYVPNPQAETSEIWMQNPRDLSSLQS-PYYNVAGQSPHGAYL 771
Query: 433 ASHTGHASFNAAAAAQSSHMQFPGMYHTPPQPGAMAASPHPFG 305
+SHT H SFN AQSSHMQF G++H P QPG M A+PH G
Sbjct: 772 SSHTAHQSFN--PTAQSSHMQFQGLFH-PSQPGTM-ANPHHMG 810
Score = 31.2 bits (69), Expect(2) = 1e-31
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 312 HLGPAIGNNVGVGVAAAAPGAQVGAY 235
H+GP + NVGVGV + P +Q+ +
Sbjct: 808 HMGPGLSGNVGVGVVPSPPPSQIAPH 833
>gb|AAO37496.1| unknown protein, 5'-partial [Oryza sativa (japonica
cultivar-group)]
Length = 715
Score = 94.7 bits (234), Expect(2) = 1e-25
Identities = 49/104 (47%), Positives = 65/104 (62%), Gaps = 4/104 (3%)
Frame = -1
Query: 610 GGATTLEDSSRVKYKDN-LYVPNPQAETSEIWLQNPRDHPGVQSTPYYNMPGQ--TPHGA 440
GG ++ED++ KYKDN LY NPQAET+++W+Q P D P + STP+YNM GQ +PH A
Sbjct: 568 GGTGSVEDANMSKYKDNNLYTLNPQAETADVWIQAPTDIPVMPSTPFYNMMGQPMSPHTA 627
Query: 439 YMASHTGHASFNAAAAAQSSHMQFPGMYH-TPPQPGAMAASPHP 311
Y+ H GHA F + +H+QFP M H P M +P P
Sbjct: 628 YLPPHNGHAPF--SPVQHPAHLQFPAMPHGLQPTTMTMVQNPQP 669
Score = 43.9 bits (102), Expect(2) = 1e-25
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = -2
Query: 303 PAIGNNVGVGVAAAAPGAQVGAYQQPPLGHLNW 205
P + N+G+ +AA A GAQVGA+QQ L HL W
Sbjct: 677 PPLAGNIGIDMAAMASGAQVGAFQQNQLSHLGW 709
>gb|AAL68853.1|AF466199_12 gb protein [Sorghum bicolor]
Length = 1009
Score = 98.6 bits (244), Expect = 6e-20
Identities = 49/97 (50%), Positives = 67/97 (68%)
Frame = -1
Query: 610 GGATTLEDSSRVKYKDNLYVPNPQAETSEIWLQNPRDHPGVQSTPYYNMPGQTPHGAYMA 431
G A ++D +R+KYKDN+Y PQ ETS+IW+Q+ R+ P +Q YYN+PGQ GA++
Sbjct: 697 GAAVGVDDVNRMKYKDNIYASTPQVETSDIWIQSAREMPPLQVPSYYNIPGQATAGAFV- 755
Query: 430 SHTGHASFNAAAAAQSSHMQFPGMYHTPPQPGAMAAS 320
+ +ASFN A AQSSH QFPG+YH P QP ++ S
Sbjct: 756 PNPANASFN--ATAQSSHAQFPGLYH-PQQPPSIGKS 789
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 591,082,302
Number of Sequences: 1393205
Number of extensions: 14730592
Number of successful extensions: 48184
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 44471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48059
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
