Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000737A_C01 KMC000737A_c01
(631 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T05384 beta-adaptin homolog F16G20.160 - Arabidopsis thalia... 345 2e-94
gb|AAL57648.1| AT4g23460/F16G20_160 [Arabidopsis thaliana] 345 2e-94
ref|NP_194077.1| beta adaptin - like protein; protein id: At4g23... 345 2e-94
ref|NP_192877.1| beta-adaptin - like protein; protein id: At4g11... 345 2e-94
gb|AAF61672.1| beta-adaptin-like protein B [Arabidopsis thaliana] 345 2e-94
>pir||T05384 beta-adaptin homolog F16G20.160 - Arabidopsis thaliana
gi|3451071|emb|CAA20467.1| beta adaptin-like protein
[Arabidopsis thaliana] gi|7269194|emb|CAB79301.1| beta
adaptin-like protein [Arabidopsis thaliana]
Length = 719
Score = 345 bits (886), Expect = 2e-94
Identities = 173/178 (97%), Positives = 177/178 (99%)
Frame = +3
Query: 96 MSRNDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM 275
MS +DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM
Sbjct: 1 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM 60
Query: 276 QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI 455
QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI
Sbjct: 61 QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI 120
Query: 456 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMV 629
TEYLCDPLQ+CLKDDDPYVRKTAAICVAKL+DINAELVEDRGFLE+LKDLISDNNPMV
Sbjct: 121 TEYLCDPLQKCLKDDDPYVRKTAAICVAKLFDINAELVEDRGFLEALKDLISDNNPMV 178
>gb|AAL57648.1| AT4g23460/F16G20_160 [Arabidopsis thaliana]
Length = 893
Score = 345 bits (886), Expect = 2e-94
Identities = 173/178 (97%), Positives = 177/178 (99%)
Frame = +3
Query: 96 MSRNDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM 275
MS +DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM
Sbjct: 1 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM 60
Query: 276 QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI 455
QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI
Sbjct: 61 QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI 120
Query: 456 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMV 629
TEYLCDPLQ+CLKDDDPYVRKTAAICVAKL+DINAELVEDRGFLE+LKDLISDNNPMV
Sbjct: 121 TEYLCDPLQKCLKDDDPYVRKTAAICVAKLFDINAELVEDRGFLETLKDLISDNNPMV 178
>ref|NP_194077.1| beta adaptin - like protein; protein id: At4g23460.1, supported by
cDNA: gi_18086375 [Arabidopsis thaliana]
Length = 893
Score = 345 bits (886), Expect = 2e-94
Identities = 173/178 (97%), Positives = 177/178 (99%)
Frame = +3
Query: 96 MSRNDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM 275
MS +DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM
Sbjct: 1 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM 60
Query: 276 QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI 455
QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI
Sbjct: 61 QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI 120
Query: 456 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMV 629
TEYLCDPLQ+CLKDDDPYVRKTAAICVAKL+DINAELVEDRGFLE+LKDLISDNNPMV
Sbjct: 121 TEYLCDPLQKCLKDDDPYVRKTAAICVAKLFDINAELVEDRGFLEALKDLISDNNPMV 178
>ref|NP_192877.1| beta-adaptin - like protein; protein id: At4g11380.1, supported by
cDNA: gi_20260511, supported by cDNA: gi_7385052
[Arabidopsis thaliana] gi|7441349|pir||T13029
beta-adaptin homolog F8L21.170 - Arabidopsis thaliana
gi|5596484|emb|CAB51422.1| beta-adaptin-like protein
[Arabidopsis thaliana] gi|7267837|emb|CAB81239.1|
beta-adaptin-like protein [Arabidopsis thaliana]
gi|20260512|gb|AAM13154.1| beta-adaptin-like protein
[Arabidopsis thaliana]
Length = 894
Score = 345 bits (886), Expect = 2e-94
Identities = 173/178 (97%), Positives = 177/178 (99%)
Frame = +3
Query: 96 MSRNDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM 275
MS +DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM
Sbjct: 1 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM 60
Query: 276 QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI 455
QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI
Sbjct: 61 QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI 120
Query: 456 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMV 629
TEYLCDPLQ+CLKDDDPYVRKTAAICVAKL+DINAELVEDRGFLE+LKDLISDNNPMV
Sbjct: 121 TEYLCDPLQKCLKDDDPYVRKTAAICVAKLFDINAELVEDRGFLEALKDLISDNNPMV 178
>gb|AAF61672.1| beta-adaptin-like protein B [Arabidopsis thaliana]
Length = 894
Score = 345 bits (886), Expect = 2e-94
Identities = 173/178 (97%), Positives = 177/178 (99%)
Frame = +3
Query: 96 MSRNDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM 275
MS +DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM
Sbjct: 1 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM 60
Query: 276 QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI 455
QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI
Sbjct: 61 QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI 120
Query: 456 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMV 629
TEYLCDPLQ+CLKDDDPYVRKTAAICVAKL+DINAELVEDRGFLE+LKDLISDNNPMV
Sbjct: 121 TEYLCDPLQKCLKDDDPYVRKTAAICVAKLFDINAELVEDRGFLEALKDLISDNNPMV 178
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 538,029,475
Number of Sequences: 1393205
Number of extensions: 11540542
Number of successful extensions: 42805
Number of sequences better than 10.0: 248
Number of HSP's better than 10.0 without gapping: 39152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42349
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
