Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000733A_C01 KMC000733A_c01
(526 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_647574.1|ND1_16442 NADH dehydrogenase subunit 1 [Pyrocoel... 34 0.91
ref|NP_797312.1| o-succinylbenzoic acid-CoA ligase [Vibrio parah... 33 1.6
ref|NP_252876.1| probable MFS transporter [Pseudomonas aeruginos... 32 5.9
>ref|NP_647574.1|ND1_16442 NADH dehydrogenase subunit 1 [Pyrocoelia rufa]
gi|21311433|gb|AAM46715.1|AF452048_13 NADH dehydrogenase
subunit 1 [Pyrocoelia rufa]
Length = 316
Score = 34.3 bits (77), Expect = 0.91
Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 4/58 (6%)
Frame = -1
Query: 187 KVFCGEHMTPICSSYKRVYCS*I----LS*MSWLCFMLVAY*LNYLLLSLYLSCSDEL 26
K+F EH+TPI S+Y Y S + +S + W+C LN+ L+ C L
Sbjct: 61 KLFSKEHITPIMSNYFMYYMSPVFSLFISLLVWICLPFFTSFLNFSFSFLFFLCVSSL 118
>ref|NP_797312.1| o-succinylbenzoic acid-CoA ligase [Vibrio parahaemolyticus RIMD
2210633] gi|28805920|dbj|BAC59196.1| o-succinylbenzoic
acid-CoA ligase [Vibrio parahaemolyticus]
Length = 480
Score = 33.5 bits (75), Expect = 1.6
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 357 HVLDNRKMKLLYSLIYLGITFLSLGIFHAGCFQCIIHRYWW 235
H+L NRK+KL+ IY+G L+ G FH G + W
Sbjct: 314 HLLKNRKIKLVDERIYIGGQTLASGYFHQGQVTVFVDEDGW 354
>ref|NP_252876.1| probable MFS transporter [Pseudomonas aeruginosa PA01]
gi|11351504|pir||A83122 probable MFS transporter PA4187
[imported] - Pseudomonas aeruginosa (strain PAO1)
gi|9950397|gb|AAG07574.1|AE004835_3 probable MFS
transporter [Pseudomonas aeruginosa PAO1]
Length = 442
Score = 31.6 bits (70), Expect = 5.9
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -2
Query: 342 RKMKLLYSLIYLGITFLSLGIFHAG 268
R+ LL+S ++ G+ L LG+FHAG
Sbjct: 314 RRCMLLHSFLWSGLALLGLGVFHAG 338
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 419,626,766
Number of Sequences: 1393205
Number of extensions: 8512905
Number of successful extensions: 18817
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18813
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
