Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000732A_C01 KMC000732A_c01
(555 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197699.1| unknown protein; protein id: At5g23080.1 [Arabi... 52 6e-06
dbj|BAC42755.1| unknown protein [Arabidopsis thaliana] 52 6e-06
gb|AAH39814.1| Similar to zinc finger protein 265 [Homo sapiens] 46 3e-04
ref|NP_065612.1| splicing factor, arginine/serine-rich 4 (SRp75)... 46 3e-04
dbj|BAC36925.1| unnamed protein product [Mus musculus] 46 3e-04
>ref|NP_197699.1| unknown protein; protein id: At5g23080.1 [Arabidopsis thaliana]
gi|9759366|dbj|BAB09825.1| gene_id:MYJ24.7~unknown
protein [Arabidopsis thaliana]
Length = 900
Score = 51.6 bits (122), Expect = 6e-06
Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Frame = -1
Query: 549 RHDPGSYSCSD-DERDRSSSKSKKRKGGSSREKSRSKRRSKHHKHRKHE--SPSRSSHYS 379
R+D S S SD RD+ S+S+ ++ SSREK RS H KH KH S SS YS
Sbjct: 829 RNDSESDSSSDYHSRDKQGSRSRSKRRESSREK-----RSSHKKHSKHRRTKKSSSSRYS 883
Query: 378 MEKDTAHSRKEKGRR 334
+++ SR+EK RR
Sbjct: 884 SDEEQKESRREKKRR 898
Score = 33.5 bits (75), Expect = 1.8
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 10/70 (14%)
Frame = -1
Query: 522 SDDERDRSSSKSK--KRKGGSSREKSRS----KRRSKHHKHRKH----ESPSRSSHYSME 373
S++E+ R + KR GG+ S S +RR +++K +H ES S S ++S +
Sbjct: 785 SEEEKSRKKREKSPGKRSGGNDLSSSESSGDERRRKRYNKKDRHRNDSESDSSSDYHSRD 844
Query: 372 KDTAHSRKEK 343
K + SR ++
Sbjct: 845 KQGSRSRSKR 854
>dbj|BAC42755.1| unknown protein [Arabidopsis thaliana]
Length = 930
Score = 51.6 bits (122), Expect = 6e-06
Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Frame = -1
Query: 549 RHDPGSYSCSD-DERDRSSSKSKKRKGGSSREKSRSKRRSKHHKHRKHE--SPSRSSHYS 379
R+D S S SD RD+ S+S+ ++ SSREK RS H KH KH S SS YS
Sbjct: 859 RNDSESDSSSDYHSRDKQGSRSRSKRRESSREK-----RSSHKKHSKHRRTKKSSSSRYS 913
Query: 378 MEKDTAHSRKEKGRR 334
+++ SR+EK RR
Sbjct: 914 SDEEQKESRREKKRR 928
Score = 33.5 bits (75), Expect = 1.8
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 10/70 (14%)
Frame = -1
Query: 522 SDDERDRSSSKSK--KRKGGSSREKSRS----KRRSKHHKHRKH----ESPSRSSHYSME 373
S++E+ R + KR GG+ S S +RR +++K +H ES S S ++S +
Sbjct: 815 SEEEKSRKKREKSPGKRSGGNDLSSSESSGDERRRKRYNKKDRHRNDSESDSSSDYHSRD 874
Query: 372 KDTAHSRKEK 343
K + SR ++
Sbjct: 875 KQGSRSRSKR 884
>gb|AAH39814.1| Similar to zinc finger protein 265 [Homo sapiens]
Length = 320
Score = 45.8 bits (107), Expect = 3e-04
Identities = 29/76 (38%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -1
Query: 552 RRHDPGSYSCSDDERDRSSSKSKKRKGGSSREKSR---SKRRSKHHKHRKHESPSRSSHY 382
R P S R RSSS S+ R SSRE+SR SK RS HR SP + S+
Sbjct: 216 RSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYS 275
Query: 381 SMEKDTAHSRKEKGRR 334
S +RK R
Sbjct: 276 SSSSSPERNRKRSRSR 291
Score = 34.7 bits (78), Expect = 0.80
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -1
Query: 519 DDERDRSSSKSKKRKGGSSREKSRSKRRSKHHKHRKHESPSRSSHYSMEKDTAHSRKEKG 340
+D + S++ + K GSS +S S+ S + S SRSS S + + SR+
Sbjct: 191 EDSNKKKSNRRSRSKSGSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSR 250
Query: 339 RR 334
R
Sbjct: 251 SR 252
Score = 31.2 bits (69), Expect = 8.9
Identities = 22/65 (33%), Positives = 27/65 (40%)
Frame = -1
Query: 534 SYSCSDDERDRSSSKSKKRKGGSSREKSRSKRRSKHHKHRKHESPSRSSHYSMEKDTAHS 355
S S S RSSS+S SR +SRS R S + R S S K + S
Sbjct: 202 SRSKSGSSHSRSSSRSSSPSSSRSRSRSRS-RSSSSSQSRSRSSSRERSRSRGSKSRSSS 260
Query: 354 RKEKG 340
R +G
Sbjct: 261 RSHRG 265
>ref|NP_065612.1| splicing factor, arginine/serine-rich 4 (SRp75); similar to
splicing factor, arginine/serine-rich 4 (SFRS4) [Mus
musculus] gi|7670438|dbj|BAA95070.1| unnamed protein
product [Mus musculus]
Length = 339
Score = 45.8 bits (107), Expect = 3e-04
Identities = 28/78 (35%), Positives = 39/78 (49%), Gaps = 18/78 (23%)
Frame = -1
Query: 510 RDRSSSKSKKRKGGSSREKSRSKRRSKHHKHRKHESP------------------SRSSH 385
R RS SK K++ SR++SRS+ RSK + RKH S SRS
Sbjct: 194 RSRSRSKDKRKGRKRSRDESRSRSRSKSERSRKHSSKRDSKVSSSSSKKKKDTDHSRSPS 253
Query: 384 YSMEKDTAHSRKEKGRRE 331
S+ K+ H++ E G+RE
Sbjct: 254 RSVSKEREHAKAESGQRE 271
Score = 39.3 bits (90), Expect = 0.033
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = -1
Query: 540 PGSYSCSDDERDRSSSKSKKRKGGSSREKSRS-KRRSKHHKHRKHE---SPSRSSHYSME 373
PGS R RS S+S+ R S + +SRS +S H K R S SRS S
Sbjct: 25 PGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRS 84
Query: 372 KDTAHSRKEKGR 337
+ + S+KEK R
Sbjct: 85 QSRSRSKKEKSR 96
Score = 35.8 bits (81), Expect = 0.36
Identities = 22/59 (37%), Positives = 30/59 (50%)
Frame = -1
Query: 513 ERDRSSSKSKKRKGGSSREKSRSKRRSKHHKHRKHESPSRSSHYSMEKDTAHSRKEKGR 337
E+ S+S+ R SR +SRSK + K K + ES SRS S E+ HS K +
Sbjct: 177 EKSLLKSRSRSRSKVGSRSRSRSKDKRKGRKRSRDESRSRSRSKS-ERSRKHSSKRDSK 234
Score = 34.3 bits (77), Expect = 1.0
Identities = 28/77 (36%), Positives = 37/77 (47%), Gaps = 5/77 (6%)
Frame = -1
Query: 549 RHDPGSYSCS-----DDERDRSSSKSKKRKGGSSREKSRSKRRSKHHKHRKHESPSRSSH 385
RHD S S S ++ER RS S+++ ++ S+EKS K RS+ K S SRS
Sbjct: 142 RHDSKSRSRSQERRAEEERRRSVSRARSQEKSRSQEKSLLKSRSR--SRSKVGSRSRSRS 199
Query: 384 YSMEKDTAHSRKEKGRR 334
K SR E R
Sbjct: 200 KDKRKGRKRSRDESRSR 216
Score = 33.9 bits (76), Expect = 1.4
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = -1
Query: 549 RHDPGSYSCSDDERDRSSSKSKKRKGGSSREKSRSKRRSKHHKHRKHESPSRSSHYSMEK 370
R + S + + + R RS S SK + + +SRSK SK K S S S S +
Sbjct: 273 RAEGESEAPNPEPRARSRSTSKSKPNVPAESRSRSKSASKTRSRSKSPSRSASRSPSRSR 332
Query: 369 DTAHSR 352
+HSR
Sbjct: 333 SRSHSR 338
Score = 32.7 bits (73), Expect = 3.0
Identities = 20/67 (29%), Positives = 30/67 (43%)
Frame = -1
Query: 552 RRHDPGSYSCSDDERDRSSSKSKKRKGGSSREKSRSKRRSKHHKHRKHESPSRSSHYSME 373
R S S R RS S S R SR +SRS+ + + + ++ SRS S +
Sbjct: 53 RSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQSRSRSKKEKSRSPSKDNKSRSRSRSPD 112
Query: 372 KDTAHSR 352
K + S+
Sbjct: 113 KSRSKSK 119
Score = 32.0 bits (71), Expect = 5.2
Identities = 23/64 (35%), Positives = 30/64 (45%), Gaps = 6/64 (9%)
Frame = -1
Query: 510 RDRSSSKSKKRKGGS------SREKSRSKRRSKHHKHRKHESPSRSSHYSMEKDTAHSRK 349
R R S KS+ R G S SR +SRS S+ + +S SRS EK + S+
Sbjct: 45 RSRHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQSRSRS---KKEKSRSPSKD 101
Query: 348 EKGR 337
K R
Sbjct: 102 NKSR 105
Score = 32.0 bits (71), Expect = 5.2
Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Frame = -1
Query: 549 RHDPGSYSCSDDERD-RSSSKSKKRKGGSSREKSR--SKRRSKHHKHR--------KHES 403
RH S S S + S S+S+ R G SR KSR S+ RS+ K + K S
Sbjct: 47 RHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQSRSRSKKEKSRSPSKDNKSRS 106
Query: 402 PSRSSHYSMEKDTAHS 355
SRS S K H+
Sbjct: 107 RSRSPDKSRSKSKDHA 122
Score = 31.6 bits (70), Expect = 6.8
Identities = 21/55 (38%), Positives = 26/55 (47%)
Frame = -1
Query: 531 YSCSDDERDRSSSKSKKRKGGSSREKSRSKRRSKHHKHRKHESPSRSSHYSMEKD 367
+S D + SSS KK+ SR SRS SK +H K ES R S E +
Sbjct: 227 HSSKRDSKVSSSSSKKKKDTDHSRSPSRSV--SKEREHAKAESGQRESRAEGESE 279
>dbj|BAC36925.1| unnamed protein product [Mus musculus]
Length = 491
Score = 45.8 bits (107), Expect = 3e-04
Identities = 28/78 (35%), Positives = 39/78 (49%), Gaps = 18/78 (23%)
Frame = -1
Query: 510 RDRSSSKSKKRKGGSSREKSRSKRRSKHHKHRKHESP------------------SRSSH 385
R RS SK K++ SR++SRS+ RSK + RKH S SRS
Sbjct: 346 RSRSRSKDKRKGRKRSRDESRSRSRSKSERSRKHSSKRDSKVSSSSSKKKKDTDHSRSPS 405
Query: 384 YSMEKDTAHSRKEKGRRE 331
S+ K+ H++ E G+RE
Sbjct: 406 RSVSKEREHAKAESGQRE 423
Score = 39.3 bits (90), Expect = 0.033
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = -1
Query: 540 PGSYSCSDDERDRSSSKSKKRKGGSSREKSRS-KRRSKHHKHRKHE---SPSRSSHYSME 373
PGS R RS S+S+ R S + +SRS +S H K R S SRS S
Sbjct: 177 PGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRS 236
Query: 372 KDTAHSRKEKGR 337
+ + S+KEK R
Sbjct: 237 QSRSRSKKEKSR 248
Score = 35.8 bits (81), Expect = 0.36
Identities = 22/59 (37%), Positives = 30/59 (50%)
Frame = -1
Query: 513 ERDRSSSKSKKRKGGSSREKSRSKRRSKHHKHRKHESPSRSSHYSMEKDTAHSRKEKGR 337
E+ S+S+ R SR +SRSK + K K + ES SRS S E+ HS K +
Sbjct: 329 EKSLLKSRSRSRSKVGSRSRSRSKDKRKGRKRSRDESRSRSRSKS-ERSRKHSSKRDSK 386
Score = 34.3 bits (77), Expect = 1.0
Identities = 28/77 (36%), Positives = 37/77 (47%), Gaps = 5/77 (6%)
Frame = -1
Query: 549 RHDPGSYSCS-----DDERDRSSSKSKKRKGGSSREKSRSKRRSKHHKHRKHESPSRSSH 385
RHD S S S ++ER RS S+++ ++ S+EKS K RS+ K S SRS
Sbjct: 294 RHDSKSRSRSQERRAEEERRRSVSRARSQEKSRSQEKSLLKSRSR--SRSKVGSRSRSRS 351
Query: 384 YSMEKDTAHSRKEKGRR 334
K SR E R
Sbjct: 352 KDKRKGRKRSRDESRSR 368
Score = 33.9 bits (76), Expect = 1.4
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = -1
Query: 549 RHDPGSYSCSDDERDRSSSKSKKRKGGSSREKSRSKRRSKHHKHRKHESPSRSSHYSMEK 370
R + S + + + R RS S SK + + +SRSK SK K S S S S +
Sbjct: 425 RAEGESEAPNPEPRARSRSTSKSKPNVPAESRSRSKSASKTRSRSKSPSRSASRSPSRSR 484
Query: 369 DTAHSR 352
+HSR
Sbjct: 485 SRSHSR 490
Score = 32.7 bits (73), Expect = 3.0
Identities = 20/67 (29%), Positives = 30/67 (43%)
Frame = -1
Query: 552 RRHDPGSYSCSDDERDRSSSKSKKRKGGSSREKSRSKRRSKHHKHRKHESPSRSSHYSME 373
R S S R RS S S R SR +SRS+ + + + ++ SRS S +
Sbjct: 205 RSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQSRSRSKKEKSRSPSKDNKSRSRSRSPD 264
Query: 372 KDTAHSR 352
K + S+
Sbjct: 265 KSRSKSK 271
Score = 32.0 bits (71), Expect = 5.2
Identities = 23/64 (35%), Positives = 30/64 (45%), Gaps = 6/64 (9%)
Frame = -1
Query: 510 RDRSSSKSKKRKGGS------SREKSRSKRRSKHHKHRKHESPSRSSHYSMEKDTAHSRK 349
R R S KS+ R G S SR +SRS S+ + +S SRS EK + S+
Sbjct: 197 RSRHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQSRSRS---KKEKSRSPSKD 253
Query: 348 EKGR 337
K R
Sbjct: 254 NKSR 257
Score = 32.0 bits (71), Expect = 5.2
Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Frame = -1
Query: 549 RHDPGSYSCSDDERD-RSSSKSKKRKGGSSREKSR--SKRRSKHHKHR--------KHES 403
RH S S S + S S+S+ R G SR KSR S+ RS+ K + K S
Sbjct: 199 RHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQSRSRSKKEKSRSPSKDNKSRS 258
Query: 402 PSRSSHYSMEKDTAHS 355
SRS S K H+
Sbjct: 259 RSRSPDKSRSKSKDHA 274
Score = 31.6 bits (70), Expect = 6.8
Identities = 21/55 (38%), Positives = 26/55 (47%)
Frame = -1
Query: 531 YSCSDDERDRSSSKSKKRKGGSSREKSRSKRRSKHHKHRKHESPSRSSHYSMEKD 367
+S D + SSS KK+ SR SRS SK +H K ES R S E +
Sbjct: 379 HSSKRDSKVSSSSSKKKKDTDHSRSPSRSV--SKEREHAKAESGQRESRAEGESE 431
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,477,830
Number of Sequences: 1393205
Number of extensions: 10463443
Number of successful extensions: 62437
Number of sequences better than 10.0: 1259
Number of HSP's better than 10.0 without gapping: 47406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58033
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
