Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000730A_C01 KMC000730A_c01
(535 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E72490 hypothetical protein APE2564 - Aeropyrum pernix (str... 34 0.96
gb|EAA17323.1| PWI domain, putative [Plasmodium yoelii yoelii] 33 2.1
dbj|BAC30100.1| unnamed protein product [Mus musculus] 33 2.8
ref|XP_192755.1| microtubule-associated protein 1 B [Mus musculus] 33 2.8
ref|NP_032660.1| microtubule-associated protein 1 B; microtubule... 33 2.8
>pir||E72490 hypothetical protein APE2564 - Aeropyrum pernix (strain K1)
gi|5106270|dbj|BAA81581.1| 120aa long hypothetical
protein [Aeropyrum pernix]
Length = 120
Score = 34.3 bits (77), Expect = 0.96
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 9/50 (18%)
Frame = +3
Query: 153 WPSSACPQLDG-GCESSQSPFSFFL--------PLWVFSFVKFWFSLVGP 275
WP++ CP LDG E + + F+ P+WV S +K SL GP
Sbjct: 26 WPTTGCPPLDGSNWEKCRGQINVFVLPSNMRKPPMWVHSMLKATISLSGP 75
>gb|EAA17323.1| PWI domain, putative [Plasmodium yoelii yoelii]
Length = 438
Score = 33.1 bits (74), Expect = 2.1
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = -2
Query: 387 ETKPISEGKTNSTQLTGKRAERPVSQISYKKAKNPIRKDRPGRTRT*QRRKPTKEERKKR 208
++ PIS ++ S++ K+ +R + Y+K+ N D R ++RK +E +KR
Sbjct: 258 DSTPISSSESESSEYKKKKEKRD-KYLKYEKSDN----DDHRRDHIVRKRKDRRENERKR 312
Query: 207 EIENFRTLRRAGD 169
+ E +R R D
Sbjct: 313 DSERYRIRHRTRD 325
>dbj|BAC30100.1| unnamed protein product [Mus musculus]
Length = 396
Score = 32.7 bits (73), Expect = 2.8
Identities = 18/53 (33%), Positives = 30/53 (55%)
Frame = -2
Query: 363 KTNSTQLTGKRAERPVSQISYKKAKNPIRKDRPGRTRT*QRRKPTKEERKKRE 205
K T+L K+ E+P ++ K+ K P++KD + R + +K K+E KK E
Sbjct: 285 KEIKTKLEEKKEEKPKKEVVKKEDKTPLKKDE--KPRKEEVKKEIKKEIKKEE 335
>ref|XP_192755.1| microtubule-associated protein 1 B [Mus musculus]
Length = 2464
Score = 32.7 bits (73), Expect = 2.8
Identities = 18/53 (33%), Positives = 30/53 (55%)
Frame = -2
Query: 363 KTNSTQLTGKRAERPVSQISYKKAKNPIRKDRPGRTRT*QRRKPTKEERKKRE 205
K T+L K+ E+P ++ K+ K P++KD + R + +K K+E KK E
Sbjct: 640 KEIKTKLEEKKEEKPKKEVVKKEDKTPLKKDE--KPRKEEVKKEIKKEIKKEE 690
>ref|NP_032660.1| microtubule-associated protein 1 B; microtubule-associated protein
5 [Mus musculus] gi|126745|sp|P14873|MAPB_MOUSE
Microtubule-associated protein 1B (MAP 1B) (MAP1.2)
(MAP1(X)) [Contains: MAP1 light chain LC1]
gi|71561|pir||QRMSP1 microtubule-associated protein
MAP1B - mouse gi|53000|emb|CAA35761.1| MAPB1 protein (AA
1-2464) [Mus musculus] gi|226741|prf||1604367A
microtubule assocd protein MAP1B
Length = 2464
Score = 32.7 bits (73), Expect = 2.8
Identities = 18/53 (33%), Positives = 30/53 (55%)
Frame = -2
Query: 363 KTNSTQLTGKRAERPVSQISYKKAKNPIRKDRPGRTRT*QRRKPTKEERKKRE 205
K T+L K+ E+P ++ K+ K P++KD + R + +K K+E KK E
Sbjct: 640 KEIKTKLEEKKEEKPKKEVVKKEDKTPLKKDE--KPRKEEVKKEIKKEIKKEE 690
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 443,642,604
Number of Sequences: 1393205
Number of extensions: 9379805
Number of successful extensions: 31961
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 29378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31716
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
