Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000729A_C01 KMC000729A_c01
(631 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM60908.1| unknown [Arabidopsis thaliana] 140 1e-32
ref|NP_566828.1| expressed protein; protein id: At3g27930.1, sup... 140 1e-32
dbj|BAB01480.1| gene_id:K24A2.1~unknown protein [Arabidopsis tha... 97 2e-19
pir||S42768 sry protein - Eurasian badger (fragment) 33 3.1
ref|NP_740257.1| unnamed protein product [Bovine kobuvirus] gi|2... 32 5.3
>gb|AAM60908.1| unknown [Arabidopsis thaliana]
Length = 425
Score = 140 bits (354), Expect = 1e-32
Identities = 65/103 (63%), Positives = 81/103 (78%)
Frame = -3
Query: 629 LLKXKVGPRISSMALAFKSWWKPSFTFSISATRDRADGQIQYGFGIXSESLREASYQRAD 450
LLK KVG S+++LAFKSWWKPSF F+ISAT + G +Q GFG+ ++LREASYQRAD
Sbjct: 316 LLKGKVGAHSSTLSLAFKSWWKPSFAFNISATTNHRTGNVQCGFGLRVDNLREASYQRAD 375
Query: 449 PNYVMLTPSKEHLAEGIAWTTGQRPMLQSDLDAGQFARLSPEI 321
PN+VMLTP+KEHLAEGI W G+RPM Q+D+DA F+ L E+
Sbjct: 376 PNFVMLTPNKEHLAEGIVWKMGKRPMYQADVDAENFSELPKEL 418
>ref|NP_566828.1| expressed protein; protein id: At3g27930.1, supported by cDNA:
103959., supported by cDNA: gi_18087556 [Arabidopsis
thaliana] gi|18087557|gb|AAL58910.1|AF462820_1
AT3g27930/K24A2_2 [Arabidopsis thaliana]
gi|21360441|gb|AAM47336.1| AT3g27930/K24A2_2
[Arabidopsis thaliana]
Length = 425
Score = 140 bits (354), Expect = 1e-32
Identities = 65/103 (63%), Positives = 81/103 (78%)
Frame = -3
Query: 629 LLKXKVGPRISSMALAFKSWWKPSFTFSISATRDRADGQIQYGFGIXSESLREASYQRAD 450
LLK KVG S+++LAFKSWWKPSF F+ISAT + G +Q GFG+ ++LREASYQRAD
Sbjct: 316 LLKGKVGAHSSTLSLAFKSWWKPSFAFNISATTNHRTGNVQCGFGLRVDNLREASYQRAD 375
Query: 449 PNYVMLTPSKEHLAEGIAWTTGQRPMLQSDLDAGQFARLSPEI 321
PN+VMLTP+KEHLAEGI W G+RPM Q+D+DA F+ L E+
Sbjct: 376 PNFVMLTPNKEHLAEGIVWKMGKRPMYQADVDAENFSELPKEL 418
>dbj|BAB01480.1| gene_id:K24A2.1~unknown protein [Arabidopsis thaliana]
Length = 351
Score = 97.1 bits (240), Expect = 2e-19
Identities = 44/73 (60%), Positives = 56/73 (76%)
Frame = -3
Query: 539 ATRDRADGQIQYGFGIXSESLREASYQRADPNYVMLTPSKEHLAEGIAWTTGQRPMLQSD 360
AT + G +Q GFG+ ++LREASYQRADPN+VMLTP+KEHLAEGI W G+RPM Q+D
Sbjct: 272 ATTNHRTGNVQCGFGLRVDNLREASYQRADPNFVMLTPNKEHLAEGIVWKMGKRPMYQAD 331
Query: 359 LDAGQFARLSPEI 321
+DA F+ L E+
Sbjct: 332 VDAENFSELPKEL 344
>pir||S42768 sry protein - Eurasian badger (fragment)
Length = 54
Score = 33.1 bits (74), Expect = 3.1
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 513 DSIWIWH-PK*KSQRSQLSKSRSQLCNAHAKQGALSRRH 400
D+ W+W PK K+QRS S S C K G SRRH
Sbjct: 8 DARWLWRIPKCKTQRSASSWGASGKCLQKLKNGRSSRRH 46
>ref|NP_740257.1| unnamed protein product [Bovine kobuvirus]
gi|24817743|dbj|BAC23066.1| unnamed protein product
[Bovine kobuvirus]
Length = 2463
Score = 32.3 bits (72), Expect = 5.3
Identities = 20/84 (23%), Positives = 39/84 (45%), Gaps = 4/84 (4%)
Frame = -3
Query: 608 PRISSM-ALAFKSWWKPSFTFSISATRDRADGQIQYGFGIXSESLR---EASYQRADPNY 441
P +S+ A FK WW+P+ + ++S D+A I+ + S++++ + PN
Sbjct: 246 PAVSTTHAQNFKHWWEPAASKALSRGVDKAPDGIEGAGKLASDAIKSKLSGARPGPSPNL 305
Query: 440 VMLTPSKEHLAEGIAWTTGQRPML 369
+ L PS + T P++
Sbjct: 306 IALNPSSTQHGNAMITTGSTAPVV 329
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 521,729,988
Number of Sequences: 1393205
Number of extensions: 10746408
Number of successful extensions: 20819
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20816
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
