Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000719A_C01 KMC000719A_c01
(728 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF43095.1|AF053769_1 homeodomain protein [Malus x domestica] 71 2e-11
gb|AAN03623.1|AF406699_1 BEL1-related homeotic protein 13 [Solan... 68 1e-10
gb|AAD51349.1| bel1-like homeodomain 2 [Arabidopsis thaliana] gi... 61 1e-08
ref|NP_179956.1| BEL1-like homeobox 4 protein (BLH4); protein id... 59 7e-08
gb|AAK43834.1|AF353092_1 BEL1-like homeobox 4 [Arabidopsis thali... 59 7e-08
>gb|AAF43095.1|AF053769_1 homeodomain protein [Malus x domestica]
Length = 809
Score = 70.9 bits (172), Expect = 2e-11
Identities = 52/129 (40%), Positives = 68/129 (52%), Gaps = 12/129 (9%)
Frame = -1
Query: 707 HKASRKQANHSATTTAINNATTASEVAPPVSQCFDSVSDDDLPPHRSIMAADDKCRHGSL 528
++ ++Q +H T TT++ VA P QCF + A+DD CR
Sbjct: 697 NRHQQQQHHHPMMAT-----TTSTTVASPAYQCFPAA------------ASDDTCRSYGT 739
Query: 527 VAADYGTAP----ASGGGGDIGSTLIRFGTT--AGDVSLTLGLRHAG-----NTPEKT-N 384
+A+ A + D +TLI FGTT AGDVSLTLGLRHAG N P+KT +
Sbjct: 740 TSANANIAAHHDHQNSSNIDSSTTLISFGTTTAAGDVSLTLGLRHAGGGGGNNMPDKTSS 799
Query: 383 SFSVRDFGG 357
SFS+RDFGG
Sbjct: 800 SFSIRDFGG 808
>gb|AAN03623.1|AF406699_1 BEL1-related homeotic protein 13 [Solanum tuberosum]
Length = 567
Score = 68.2 bits (165), Expect = 1e-10
Identities = 52/136 (38%), Positives = 67/136 (49%), Gaps = 19/136 (13%)
Frame = -1
Query: 728 PPMQSIDHKASRKQANHSA--TTTAINNATTASEVAP-----------------PVSQCF 606
P S+ + +S +A TTTA+ A T + P P
Sbjct: 437 PTPNSLTNTSSTNMTTTTAPTTTTALAAAETGTAATPITVTSSKRSQINATDSDPSLVAI 496
Query: 605 DSVSDDDLPPHRSIMAADDKCRHGSLVAADYGTAPASGGGGDIGSTLIRFGTTAGDVSLT 426
+S S++ +I DD CR G+L + D GT +GST+IRFGTTAGDVSLT
Sbjct: 497 NSFSENQATFPTNIHDPDD-CRRGNL-SGDDGTTTHD----HMGSTMIRFGTTAGDVSLT 550
Query: 425 LGLRHAGNTPEKTNSF 378
LGLRHAGN PE T+ F
Sbjct: 551 LGLRHAGNLPENTHFF 566
>gb|AAD51349.1| bel1-like homeodomain 2 [Arabidopsis thaliana]
gi|15215857|gb|AAK91472.1| AT4g36870/C7A10_490
[Arabidopsis thaliana]
Length = 739
Score = 61.2 bits (147), Expect = 1e-08
Identities = 55/149 (36%), Positives = 69/149 (45%), Gaps = 29/149 (19%)
Frame = -1
Query: 716 SIDHKASRKQANHSATTTAINNATTASEVAPPVSQCFDSVS------------DDD---- 585
S D K+++ N S T + T + AP S +V+ ++D
Sbjct: 590 SNDDKSTKSNNNESNFTAVRTTSQTPTTTAPDASDADAAVATGHRLRSNINAYENDASSL 649
Query: 584 -LPPHRSIMAA------DDKCRHGSLVA-ADYGTAPASGGGGDI----GSTLIRFGTT-A 444
LP S AA D R+G A + T S GG D G +IRFGT
Sbjct: 650 LLPSSYSNAAAPAAVSDDLNSRYGGSDAFSAVATCQQSVGGFDDADMDGVNVIRFGTNPT 709
Query: 443 GDVSLTLGLRHAGNTPEKTNSFSVRDFGG 357
GDVSLTLGLRHAGN P+K SF VR+FGG
Sbjct: 710 GDVSLTLGLRHAGNMPDKDASFCVREFGG 738
>ref|NP_179956.1| BEL1-like homeobox 4 protein (BLH4); protein id: At2g23760.1,
supported by cDNA: gi_13877512, supported by cDNA:
gi_16648804 [Arabidopsis thaliana]
gi|7488061|pir||T02415 probable homeodomain
transcription factor [imported] - Arabidopsis thaliana
gi|3152608|gb|AAC17087.1| putative homeodomain
transcription factor [Arabidopsis thaliana]
gi|16648805|gb|AAL25593.1| At2g23760/F27L4.6
[Arabidopsis thaliana] gi|22655382|gb|AAM98283.1|
At2g23760/F27L4.6 [Arabidopsis thaliana]
Length = 627
Score = 58.9 bits (141), Expect = 7e-08
Identities = 29/40 (72%), Positives = 32/40 (79%), Gaps = 1/40 (2%)
Frame = -1
Query: 476 GSTLIRFGTT-AGDVSLTLGLRHAGNTPEKTNSFSVRDFG 360
G +IRFGT GDVSLTLGLRH+GN P+K SFSVRDFG
Sbjct: 586 GVNVIRFGTKQTGDVSLTLGLRHSGNIPDKNTSFSVRDFG 625
>gb|AAK43834.1|AF353092_1 BEL1-like homeobox 4 [Arabidopsis thaliana]
Length = 627
Score = 58.9 bits (141), Expect = 7e-08
Identities = 29/40 (72%), Positives = 32/40 (79%), Gaps = 1/40 (2%)
Frame = -1
Query: 476 GSTLIRFGTT-AGDVSLTLGLRHAGNTPEKTNSFSVRDFG 360
G +IRFGT GDVSLTLGLRH+GN P+K SFSVRDFG
Sbjct: 586 GVNVIRFGTKQTGDVSLTLGLRHSGNIPDKNTSFSVRDFG 625
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 633,002,166
Number of Sequences: 1393205
Number of extensions: 14293037
Number of successful extensions: 82777
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 57749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79435
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34343566934
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
