Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000716A_C01 KMC000716A_c01
(562 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A96525 protein T1N15.13 [imported] - Arabidopsis thaliana g... 33 2.4
ref|XP_156358.1| hypothetical protein XP_156358 [Mus musculus] 31 9.1
>pir||A96525 protein T1N15.13 [imported] - Arabidopsis thaliana
gi|8778691|gb|AAF79699.1|AC020889_7 T1N15.13
[Arabidopsis thaliana]
Length = 84
Score = 33.1 bits (74), Expect = 2.4
Identities = 18/78 (23%), Positives = 40/78 (51%)
Frame = +3
Query: 240 YAHLVMPFGVLQSFHTIQELLHQFHLVINYKIWLHKLQLSTFLFGALQHQISCEHNINES 419
+A + MP V+ T L H L++ ++I + + FLFG L+H+++ ++++
Sbjct: 8 FARIDMPLSVING--TFNVLYHPLTLLVKFQIVV--ILNINFLFGHLKHELNVDYHLRHE 63
Query: 420 SSTFDLRVDLILFYSHQN 473
+ ++D+ L +N
Sbjct: 64 TFVDQAKIDISLSVEPRN 81
>ref|XP_156358.1| hypothetical protein XP_156358 [Mus musculus]
Length = 526
Score = 31.2 bits (69), Expect = 9.1
Identities = 17/48 (35%), Positives = 25/48 (51%)
Frame = +1
Query: 415 SHLQHLISELISFSFIHIRICPRAKIQDCAL*SELSINIILFKWCQVQ 558
SH+ L++E I FS+I PR+ + L S L I F+ C +Q
Sbjct: 348 SHVAQLLAEQIPFSYIFYGCAPRSPMHHARLTSWLYIANRTFQMCSIQ 395
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,666,895
Number of Sequences: 1393205
Number of extensions: 9517016
Number of successful extensions: 19751
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19751
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
