Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000713A_C01 KMC000713A_c01
(591 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193253.2| hypothetical protein; protein id: At4g15180.1 [... 140 9e-33
pir||G71415 hypothetical protein - Arabidopsis thaliana gi|22448... 70 3e-11
ref|NP_752267.1| Putative exopolygalacturonate lyase [Escherichi... 34 1.6
ref|NP_753866.1| Starvation sensing protein rspA [Escherichia co... 32 4.6
ref|NP_078696.1| Tristetraprolin-like zinc finger protein C3H [L... 32 6.0
>ref|NP_193253.2| hypothetical protein; protein id: At4g15180.1 [Arabidopsis thaliana]
Length = 2303
Score = 140 bits (354), Expect = 9e-33
Identities = 63/100 (63%), Positives = 84/100 (84%), Gaps = 1/100 (1%)
Frame = -3
Query: 586 SNPDRCLARASRXCLSLPDINSFYTKAQEPSGHRVYGPRTVRSMLARMEKQPQRSWPKDQ 407
++PD L +A+R CLSLPD+ SFY KAQ+PS HRVYGP+TV++M+++M KQPQR WPKD+
Sbjct: 2197 TDPDLTLVKATRGCLSLPDVASFYAKAQKPSKHRVYGPKTVKTMVSQMSKQPQRPWPKDK 2256
Query: 406 IWSFRSSPIFFGSPMLDAVINN-SSLDREMVHWLKHRPDV 290
IW+F+S+P FGSPM DAV+NN SSLDRE++ WL++R V
Sbjct: 2257 IWTFKSTPRVFGSPMFDAVLNNSSSLDRELLQWLRNRRHV 2296
>pir||G71415 hypothetical protein - Arabidopsis thaliana
gi|2244876|emb|CAB10297.1| hypothetical protein
[Arabidopsis thaliana] gi|7268264|emb|CAB78560.1|
hypothetical protein [Arabidopsis thaliana]
Length = 2351
Score = 69.7 bits (169), Expect = 3e-11
Identities = 29/49 (59%), Positives = 42/49 (85%)
Frame = -3
Query: 586 SNPDRCLARASRXCLSLPDINSFYTKAQEPSGHRVYGPRTVRSMLARME 440
++PD L +A+R CLSLPD+ SFY KAQ+PS HRVYGP+TV++M+++M+
Sbjct: 2210 TDPDLTLVKATRGCLSLPDVASFYAKAQKPSKHRVYGPKTVKTMVSQMQ 2258
>ref|NP_752267.1| Putative exopolygalacturonate lyase [Escherichia coli CFT073]
gi|26106625|gb|AAN78811.1|AE016755_311 Putative
exopolygalacturonate lyase [Escherichia coli CFT073]
Length = 768
Score = 33.9 bits (76), Expect = 1.6
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = -1
Query: 423 LGLKTKYGHSEVVRYSLVAQC*ML**I-TPHWTGRWFI---G*STDLMFQAMVDY*ILGR 256
L LKTK GHS + +++L+ L I TP + W + G STDL F +++D +GR
Sbjct: 14 LNLKTKQGHSRMNKHTLLLTVLFLNLICTPVFAQNWQVATFGQSTDLNFSSLIDSAKIGR 73
Query: 255 GRS 247
+
Sbjct: 74 NNA 76
>ref|NP_753866.1| Starvation sensing protein rspA [Escherichia coli CFT073]
gi|26108229|gb|AAN80431.1|AE016761_6 Starvation sensing
protein rspA [Escherichia coli CFT073]
Length = 415
Score = 32.3 bits (72), Expect = 4.6
Identities = 15/48 (31%), Positives = 24/48 (49%)
Frame = -3
Query: 442 EKQPQRSWPKDQIWSFRSSPIFFGSPMLDAVINNSSLDREMVHWLKHR 299
E + WP++Q+WS + F + DAV N D ++H + HR
Sbjct: 181 EPATKGQWPEEQLWSTEKY-LDFMPKLFDAVRNKFGFDEHLLHDMHHR 227
>ref|NP_078696.1| Tristetraprolin-like zinc finger protein C3H [Lymphocystis disease
virus 1]
Length = 366
Score = 32.0 bits (71), Expect = 6.0
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +1
Query: 148 WKHSTRNKRFGLIITDPHAKRGRQL*MACFNGYAPSPSQNLIVHHGLEHQVCASANEPSP 327
WK NK ++ G + C + + P P++ +HQ+C E P
Sbjct: 154 WKIPKSNKPCKYLVNGQICPFGPE---KCHHNHGPPPAKK-------KHQLCKYIKENQP 203
Query: 328 CPVRSY-LLQHLTLGYQRISDYF 393
CP ++Y L QH + ++ Y+
Sbjct: 204 CPFKAYCLYQHEQVQKTQLCKYY 226
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 549,276,775
Number of Sequences: 1393205
Number of extensions: 12932323
Number of successful extensions: 36490
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 34377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36148
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
