Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000711A_C01 KMC000711A_c01
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_034456.1| glycoprotein 1b, alpha polypeptide [Mus musculu... 33 3.0
ref|NP_010621.1| Sick With RSC; Swr1p [Saccharomyces cerevisiae]... 32 4.0
>ref|NP_034456.1| glycoprotein 1b, alpha polypeptide [Mus musculus]
gi|2331240|gb|AAC53320.1| platelet glycoprotein Ib-alpha
[Mus musculus]
Length = 734
Score = 32.7 bits (73), Expect = 3.0
Identities = 25/76 (32%), Positives = 37/76 (47%), Gaps = 1/76 (1%)
Frame = +3
Query: 240 SLLPTPFSCS*ITASHRLFVFSFPNILDFKGNRIDEPLTLSSRFCLFL-LCFSVAADLWL 416
+LLPT S + I F+ + P + + + L+S FC FL L F V LWL
Sbjct: 565 TLLPTLESTTTIIPEQNSFL-NLPEVALVSSDTSESSPFLNSDFCCFLPLGFYVLGLLWL 623
Query: 417 LSPVRKSVTLLTFSWY 464
L + LLT++W+
Sbjct: 624 LFASVVLILLLTWTWH 639
>ref|NP_010621.1| Sick With RSC; Swr1p [Saccharomyces cerevisiae]
gi|6136666|sp|Q05471|YD34_YEAST Hypothetical 174.5 kDa
helicase in GPI8-MSN5 intergenic region
gi|2131434|pir||S70099 hypothetical protein YDR334w -
yeast (Saccharomyces cerevisiae)
gi|1230661|gb|AAB64770.1| Ydr334wp [Saccharomyces
cerevisiae]
Length = 1514
Score = 32.3 bits (72), Expect = 4.0
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = -2
Query: 460 HEKVSKVTDFLTGESSHRSAATEKQSRNKQNRELRVKGSSIRFPLKSSIFGK 305
HE S + +TGE S +++E +S+N+ +RE K S+ S++FGK
Sbjct: 560 HESSSSESSVMTGEESSIYSSSENESQNENDRESDDKTPSVGL---SALFGK 608
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 411,897,339
Number of Sequences: 1393205
Number of extensions: 7749511
Number of successful extensions: 16989
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16984
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
