Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000710A_C01 KMC000710A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_073474.1| 89L protein [Yaba-like disease virus] gi|120562... 33 3.0
sp|Q9QB92|MCES_YABAM mRNA capping enzyme, small subunit (mRNA (g... 32 6.6
>ref|NP_073474.1| 89L protein [Yaba-like disease virus] gi|12056248|emb|CAC21327.1|
89L protein [Yaba-like disease virus]
Length = 287
Score = 32.7 bits (73), Expect = 3.0
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 5/120 (4%)
Frame = +3
Query: 60 IFRKC----TRLQC-LFKCGKLFKSLNSRWQTK*Q**FFIIKYVK*LVAVYASIRCIYNF 224
+F KC TR+ C LFK +LFK N W +K + AS C N
Sbjct: 160 LFGKCVIDTTRIYCSLFKSVRLFKCANDSW-------------LKDSAIIVASNACKKNI 206
Query: 225 VGNNTCIYKIYLSFVWPRLKGDTFNVLPA*WDTYSTDIIYASIAFFLNIITKLYPSIFFL 404
+ + + S W F++L D+ + I FLN TK+Y S++++
Sbjct: 207 DCFMSHVRSVTKSLNWKESNNVQFSILK---DSVDKEFIDK----FLNFSTKVYESLYYV 259
>sp|Q9QB92|MCES_YABAM mRNA capping enzyme, small subunit (mRNA
(guanine-N(7)-)-methyltransferase)
gi|6681628|dbj|BAA88803.1| similar to vaccinia D12L
[Yaba monkey tumor virus]
Length = 287
Score = 31.6 bits (70), Expect = 6.6
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 5/120 (4%)
Frame = +3
Query: 60 IFRKC----TRLQC-LFKCGKLFKSLNSRWQTK*Q**FFIIKYVK*LVAVYASIRCIYNF 224
+F +C TR+ C LFK +LFK N W +K + AS C N
Sbjct: 160 LFGRCVIDTTRVYCSLFKSVRLFKCANDSW-------------LKDSAIIVASNACKKNI 206
Query: 225 VGNNTCIYKIYLSFVWPRLKGDTFNVLPA*WDTYSTDIIYASIAFFLNIITKLYPSIFFL 404
+ I + S W F++L D+ + I FLN TK+Y S++++
Sbjct: 207 DYFMSHIRSVTKSLNWKESNNVQFSILK---DSVDKEFIDK----FLNFSTKVYESLYYV 259
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 439,852,944
Number of Sequences: 1393205
Number of extensions: 8937219
Number of successful extensions: 15565
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15561
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
