Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000704A_C02 KMC000704A_c02
(573 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_790798.1| glucose-6-phosphate isomerase [Pseudomonas syri... 33 3.3
ref|NP_214468.1| phosphoenolpyruvate synthase [Aquifex aeolicus]... 32 7.4
ref|ZP_00128187.1| hypothetical protein [Pseudomonas syringae pv... 31 9.7
>ref|NP_790798.1| glucose-6-phosphate isomerase [Pseudomonas syringae pv. tomato str.
DC3000] gi|28851416|gb|AAO54493.1| glucose-6-phosphate
isomerase [Pseudomonas syringae pv. tomato str. DC3000]
Length = 554
Score = 32.7 bits (73), Expect = 3.3
Identities = 17/55 (30%), Positives = 31/55 (55%)
Frame = +2
Query: 260 DETSHIIYFTISLAGLKLIDYKESWIQEDTRPLSISKKGDLRQRERMKLIYHPSL 424
D+ FT+S AGL +DY ++ I +TR L ++ G++ ++ +K Y+ L
Sbjct: 37 DDPKRFSQFTLSSAGL-FLDYSKNLITAETRDLLVALAGEVGLKDAIKAQYYGEL 90
>ref|NP_214468.1| phosphoenolpyruvate synthase [Aquifex aeolicus]
gi|6225866|sp|O67899|PPSA_AQUAE Phosphoenolpyruvate
synthase (Pyruvate,water dikinase) (PEP synthase)
gi|7434947|pir||G70483 pyruvate, water dikinase (EC
2.7.9.2) - Aquifex aeolicus gi|2984345|gb|AAC07865.1|
phosphoenolpyruvate synthase [Aquifex aeolicus VF5]
Length = 856
Score = 31.6 bits (70), Expect = 7.4
Identities = 28/83 (33%), Positives = 42/83 (49%), Gaps = 4/83 (4%)
Frame = +3
Query: 195 LHCEVIHQEAYIKLELE*NIIEMKLHISFILLFHWLA*SLLITRKVGSKKIRAH----YQ 362
LH E + +E Y KLE E N+I+ K + F L++H+ L G K+R + Q
Sbjct: 540 LHYEDL-KELYEKLERE-NLIDEKGFVQFKLIYHYANGRLANKLAKGKDKLRVNLRKILQ 597
Query: 363 YQKKETFGREKE*SSYITRHSTG 431
+ TFG E + + YI + S G
Sbjct: 598 DIENLTFGYEDKATYYIKKLSYG 620
>ref|ZP_00128187.1| hypothetical protein [Pseudomonas syringae pv. syringae B728a]
Length = 554
Score = 31.2 bits (69), Expect = 9.7
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +2
Query: 284 FTISLAGLKLIDYKESWIQEDTRPLSISKKGDLRQRERMKLIYHPSL 424
FT+S AGL +DY ++ I +TR L +S G++ ++ +K Y L
Sbjct: 45 FTLSSAGL-FLDYSKNLITTETRDLLVSLAGEVGLKDAIKAQYDGEL 90
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 465,229,808
Number of Sequences: 1393205
Number of extensions: 9480762
Number of successful extensions: 15991
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15985
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
