Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000701A_C01 KMC000701A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194735.2| putative protein; protein id: At4g30060.1, supp... 47 2e-04
ref|NP_194317.1| putative protein; protein id: At4g25870.1 [Arab... 45 6e-04
dbj|BAC43211.1| unknown protein [Arabidopsis thaliana] gi|273117... 45 8e-04
ref|NP_179506.2| unknown protein; protein id: At2g19160.1, suppo... 43 0.002
ref|NP_200537.2| putative protein; protein id: At5g57270.1, supp... 36 0.27
>ref|NP_194735.2| putative protein; protein id: At4g30060.1, supported by cDNA:
gi_17065049 [Arabidopsis thaliana]
gi|17065050|gb|AAL32679.1| putative protein [Arabidopsis
thaliana] gi|21387127|gb|AAM47967.1| putative protein
[Arabidopsis thaliana]
Length = 401
Score = 47.0 bits (110), Expect = 2e-04
Identities = 19/30 (63%), Positives = 24/30 (79%)
Frame = -2
Query: 546 NGSRRSCYLFARKFLPETQDKLIQIYSNYT 457
NG +R CYLF RKF P+T DKL+ ++SNYT
Sbjct: 365 NGIQRPCYLFGRKFHPDTLDKLLDLFSNYT 394
>ref|NP_194317.1| putative protein; protein id: At4g25870.1 [Arabidopsis thaliana]
gi|7485482|pir||T04241 hypothetical protein F14M19.150 -
Arabidopsis thaliana gi|4539305|emb|CAB39608.1| putative
protein [Arabidopsis thaliana]
gi|7269438|emb|CAB79442.1| putative protein [Arabidopsis
thaliana]
Length = 389
Score = 45.1 bits (105), Expect = 6e-04
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = -2
Query: 546 NGSRRSCYLFARKFLPETQDKLIQIYSNYT 457
NG +R CYLFARKF P+T D L+ ++ NYT
Sbjct: 356 NGIKRPCYLFARKFHPDTLDTLVNLFPNYT 385
>dbj|BAC43211.1| unknown protein [Arabidopsis thaliana] gi|27311797|gb|AAO00864.1|
Unknown protein [Arabidopsis thaliana]
Length = 376
Score = 44.7 bits (104), Expect = 8e-04
Identities = 18/30 (60%), Positives = 24/30 (80%)
Frame = -2
Query: 543 GSRRSCYLFARKFLPETQDKLIQIYSNYTT 454
G +R CYLFARKF PET D+L+ ++ NYT+
Sbjct: 345 GEQRPCYLFARKFNPETLDRLMYLFPNYTS 374
>ref|NP_179506.2| unknown protein; protein id: At2g19160.1, supported by cDNA:
gi_17065505 [Arabidopsis thaliana]
gi|17065506|gb|AAL32907.1| Unknown protein [Arabidopsis
thaliana]
Length = 394
Score = 43.1 bits (100), Expect = 0.002
Identities = 17/31 (54%), Positives = 24/31 (76%)
Frame = -2
Query: 546 NGSRRSCYLFARKFLPETQDKLIQIYSNYTT 454
NG +R CYLF RKF +T DKL++++ NYT+
Sbjct: 362 NGIKRPCYLFGRKFHADTLDKLMELFPNYTS 392
>ref|NP_200537.2| putative protein; protein id: At5g57270.1, supported by cDNA:
gi_17065015, supported by cDNA: gi_17065151, supported
by cDNA: gi_20260013 [Arabidopsis thaliana]
gi|17065152|gb|AAL32730.1| Unknown protein [Arabidopsis
thaliana]
Length = 388
Score = 36.2 bits (82), Expect = 0.27
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = -2
Query: 543 GSRRSCYLFARKFLPETQDKLIQIYSNYTT 454
G RR CYLFARK + KL++++ NYT+
Sbjct: 356 GIRRPCYLFARKLHSDALYKLVRLFPNYTS 385
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 448,648,122
Number of Sequences: 1393205
Number of extensions: 9245374
Number of successful extensions: 18567
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18565
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
