Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000699A_C01 KMC000699A_c01
(614 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D86254 hypothetical protein [imported] - Arabidopsis thalia... 174 8e-43
ref|NP_172659.1| putative DNA-binding protein; protein id: At1g1... 174 8e-43
ref|NP_187418.1| hypothetical protein; protein id: At3g07610.1 [... 157 1e-37
pir||T01440 hypothetical protein F24O1.2 - Arabidopsis thaliana ... 157 1e-37
ref|NP_176421.1| hypothetical protein; protein id: At1g62310.1 [... 157 1e-37
>pir||D86254 hypothetical protein [imported] - Arabidopsis thaliana
gi|3157933|gb|AAC17616.1| Contains similarity to box
helicases gb|U29097 from C. elegans and to the ENBP1 gene
product gb|X95995 from Vicia sativa. [Arabidopsis
thaliana]
Length = 851
Score = 174 bits (441), Expect = 8e-43
Identities = 82/108 (75%), Positives = 94/108 (86%), Gaps = 4/108 (3%)
Frame = -1
Query: 611 FYLTWEHXKKLKEEFG----VEPWTFKQNLGEXVFIPAGCPHQVRNLKSCTKVAADFVSP 444
++LT EH +KLK EFG +EPWTF Q LGE VFIPAGCPHQVRNLKSCTKVA DFVSP
Sbjct: 740 YFLTVEHKRKLKAEFGMVTWIEPWTFVQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 799
Query: 443 ENVHECLRLTNEFRQLPKNHKAREDKLEIKKMIVYAVDQAIKDLTDLL 300
EN+ ECLRLT+EFRQLPKNHKAREDKLEIKKM++YAV+QA+K++ LL
Sbjct: 800 ENIDECLRLTDEFRQLPKNHKAREDKLEIKKMVIYAVEQALKEVETLL 847
>ref|NP_172659.1| putative DNA-binding protein; protein id: At1g11950.1 [Arabidopsis
thaliana]
Length = 879
Score = 174 bits (441), Expect = 8e-43
Identities = 82/108 (75%), Positives = 94/108 (86%), Gaps = 4/108 (3%)
Frame = -1
Query: 611 FYLTWEHXKKLKEEFG----VEPWTFKQNLGEXVFIPAGCPHQVRNLKSCTKVAADFVSP 444
++LT EH +KLK EFG +EPWTF Q LGE VFIPAGCPHQVRNLKSCTKVA DFVSP
Sbjct: 768 YFLTVEHKRKLKAEFGMVTWIEPWTFVQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 827
Query: 443 ENVHECLRLTNEFRQLPKNHKAREDKLEIKKMIVYAVDQAIKDLTDLL 300
EN+ ECLRLT+EFRQLPKNHKAREDKLEIKKM++YAV+QA+K++ LL
Sbjct: 828 ENIDECLRLTDEFRQLPKNHKAREDKLEIKKMVIYAVEQALKEVETLL 875
>ref|NP_187418.1| hypothetical protein; protein id: At3g07610.1 [Arabidopsis thaliana]
gi|6466944|gb|AAF13079.1|AC009176_6 hypothetical protein
[Arabidopsis thaliana]
Length = 1027
Score = 157 bits (397), Expect = 1e-37
Identities = 72/101 (71%), Positives = 84/101 (82%)
Frame = -1
Query: 611 FYLTWEHXKKLKEEFGVEPWTFKQNLGEXVFIPAGCPHQVRNLKSCTKVAADFVSPENVH 432
FYLT H KLKEE+G+EPWTF Q LG+ V IP GCPHQVRNLKSC KVA DFVSPENV
Sbjct: 791 FYLTRYHIMKLKEEYGIEPWTFNQKLGDAVLIPVGCPHQVRNLKSCNKVALDFVSPENVS 850
Query: 431 ECLRLTNEFRQLPKNHKAREDKLEIKKMIVYAVDQAIKDLT 309
ECLRLT ++R LP NH A+EDKL +KKMIV+AVD+A++DL+
Sbjct: 851 ECLRLTKQYRLLPPNHFAKEDKLGVKKMIVHAVDKALRDLS 891
>pir||T01440 hypothetical protein F24O1.2 - Arabidopsis thaliana
gi|7940293|gb|AAF70852.1|AC003113_19 F24O1.3 [Arabidopsis
thaliana]
Length = 906
Score = 157 bits (396), Expect = 1e-37
Identities = 71/83 (85%), Positives = 75/83 (89%)
Frame = -1
Query: 608 YLTWEHXKKLKEEFGVEPWTFKQNLGEXVFIPAGCPHQVRNLKSCTKVAADFVSPENVHE 429
YLT EH +KLK E+G+EPWTF Q LGE VFIPAGCPHQVRNLKSCTKVA DFVSPEN+HE
Sbjct: 818 YLTLEHKRKLKAEYGIEPWTFVQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENIHE 877
Query: 428 CLRLTNEFRQLPKNHKAREDKLE 360
CLRLT EFRQLPKNHKAREDKLE
Sbjct: 878 CLRLTEEFRQLPKNHKAREDKLE 900
>ref|NP_176421.1| hypothetical protein; protein id: At1g62310.1 [Arabidopsis thaliana]
Length = 883
Score = 157 bits (396), Expect = 1e-37
Identities = 71/83 (85%), Positives = 75/83 (89%)
Frame = -1
Query: 608 YLTWEHXKKLKEEFGVEPWTFKQNLGEXVFIPAGCPHQVRNLKSCTKVAADFVSPENVHE 429
YLT EH +KLK E+G+EPWTF Q LGE VFIPAGCPHQVRNLKSCTKVA DFVSPEN+HE
Sbjct: 795 YLTLEHKRKLKAEYGIEPWTFVQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENIHE 854
Query: 428 CLRLTNEFRQLPKNHKAREDKLE 360
CLRLT EFRQLPKNHKAREDKLE
Sbjct: 855 CLRLTEEFRQLPKNHKAREDKLE 877
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 471,085,753
Number of Sequences: 1393205
Number of extensions: 9152400
Number of successful extensions: 19306
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 18976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19293
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
