Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000693A_C01 KMC000693A_c01
(506 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180483.1| pumilio-family RNA-binding protein, putative; p... 154 6e-37
gb|AAM20149.1| putative pumilio/Mpt5 family RNA-binding protein ... 146 1e-34
ref|NP_180482.1| pumilio-family RNA-binding protein, putative; p... 146 1e-34
ref|NP_180478.1| pumilio-family RNA-binding protein, putative; p... 135 2e-31
dbj|BAB89558.1| putative pumilio/Mpt5 family RNA-binding protein... 91 8e-18
>ref|NP_180483.1| pumilio-family RNA-binding protein, putative; protein id:
At2g29200.1 [Arabidopsis thaliana]
gi|25354258|pir||F84693 hypothetical protein At2g29200
[imported] - Arabidopsis thaliana
gi|3980412|gb|AAC95215.1| putative pumilio/Mpt5 family
RNA-binding protein [Arabidopsis thaliana]
Length = 968
Score = 154 bits (389), Expect = 6e-37
Identities = 92/169 (54%), Positives = 103/169 (60%), Gaps = 1/169 (0%)
Frame = +1
Query: 1 ENEKMRGSASAEWGGDGLIGLPGLGLGSKQKSLAEIFQDDMGHKTTIAGFHSRPASRNAF 180
E EK SAS EW +GLIGLPGLGLG KQKS A+IFQ DMGH +A SRPASRN F
Sbjct: 164 EGEKTGASAS-EWDANGLIGLPGLGLGGKQKSFADIFQADMGHGHPVAQQPSRPASRNTF 222
Query: 181 DENVDIMTSAEADLADLCRDSSATDALRSGTNLQGSSATQNNGTQSSYSYAAALGSPLSR 360
DENVD S NL SA+Q G S YSYAA LGS LSR
Sbjct: 223 DENVD-----------------------SNNNL-SPSASQGIGAPSPYSYAAVLGSSLSR 258
Query: 361 STTPDPQHVARAPSPCLTPIGGGRVVAAEKRGMGNPDAYN-VSSGLNGS 504
+ TPDPQ +AR PSPCLTPIG GR+ + +KR N +N V+SGLN S
Sbjct: 259 NGTPDPQAIARVPSPCLTPIGSGRMSSNDKRNTSNQSPFNGVTSGLNES 307
>gb|AAM20149.1| putative pumilio/Mpt5 family RNA-binding protein [Arabidopsis
thaliana]
Length = 972
Score = 146 bits (369), Expect = 1e-34
Identities = 84/161 (52%), Positives = 97/161 (60%)
Frame = +1
Query: 22 SASAEWGGDGLIGLPGLGLGSKQKSLAEIFQDDMGHKTTIAGFHSRPASRNAFDENVDIM 201
++S+EW +GLIGLPGLG+G KQKS A+IFQ DMGH + SRPASRN FDENVD
Sbjct: 178 ASSSEWDANGLIGLPGLGIGGKQKSFADIFQADMGHGHPVTKQPSRPASRNTFDENVD-- 235
Query: 202 TSAEADLADLCRDSSATDALRSGTNLQGSSATQNNGTQSSYSYAAALGSPLSRSTTPDPQ 381
S NL SA+Q G S YSYAA LGS LSR+ TPDPQ
Sbjct: 236 ---------------------SKNNL-SPSASQGIGAPSPYSYAAVLGSSLSRNGTPDPQ 273
Query: 382 HVARAPSPCLTPIGGGRVVAAEKRGMGNPDAYNVSSGLNGS 504
+AR PSPCLTPIG GRV + +KR N +N GLN S
Sbjct: 274 AIARVPSPCLTPIGSGRVSSNDKRNTSNQSPFN--GGLNES 312
>ref|NP_180482.1| pumilio-family RNA-binding protein, putative; protein id:
At2g29190.1, supported by cDNA: gi_20465636 [Arabidopsis
thaliana] gi|25354256|pir||E84693 hypothetical protein
At2g29190 [imported] - Arabidopsis thaliana
gi|3980413|gb|AAC95216.1| putative pumilio/Mpt5 family
RNA-binding protein [Arabidopsis thaliana]
Length = 972
Score = 146 bits (369), Expect = 1e-34
Identities = 84/161 (52%), Positives = 97/161 (60%)
Frame = +1
Query: 22 SASAEWGGDGLIGLPGLGLGSKQKSLAEIFQDDMGHKTTIAGFHSRPASRNAFDENVDIM 201
++S+EW +GLIGLPGLG+G KQKS A+IFQ DMGH + SRPASRN FDENVD
Sbjct: 178 ASSSEWDANGLIGLPGLGIGGKQKSFADIFQADMGHGHPVTKQPSRPASRNTFDENVD-- 235
Query: 202 TSAEADLADLCRDSSATDALRSGTNLQGSSATQNNGTQSSYSYAAALGSPLSRSTTPDPQ 381
S NL SA+Q G S YSYAA LGS LSR+ TPDPQ
Sbjct: 236 ---------------------SKNNL-SPSASQGIGAPSPYSYAAVLGSSLSRNGTPDPQ 273
Query: 382 HVARAPSPCLTPIGGGRVVAAEKRGMGNPDAYNVSSGLNGS 504
+AR PSPCLTPIG GRV + +KR N +N GLN S
Sbjct: 274 AIARVPSPCLTPIGSGRVSSNDKRNTSNQSPFN--GGLNES 312
>ref|NP_180478.1| pumilio-family RNA-binding protein, putative; protein id:
At2g29140.1 [Arabidopsis thaliana]
gi|25354254|pir||A84693 hypothetical protein At2g29140
[imported] - Arabidopsis thaliana
gi|3980417|gb|AAC95220.1| putative pumilio/Mpt5 family
RNA-binding protein [Arabidopsis thaliana]
Length = 964
Score = 135 bits (341), Expect = 2e-31
Identities = 83/163 (50%), Positives = 97/163 (58%), Gaps = 1/163 (0%)
Frame = +1
Query: 19 GSASAEWGGDGLIGLPGLGLGSKQKSLAEIFQDDMGHKTTIAGFHSRPASRNAFDENVDI 198
G++++EW +GLIGL GLG KQKS A+IFQ DMGH + SRPASRN FDENVD
Sbjct: 170 GASASEWDANGLIGL---GLGGKQKSFADIFQADMGHP--VVQQPSRPASRNTFDENVD- 223
Query: 199 MTSAEADLADLCRDSSATDALRSGTNLQGSSATQNNGTQSSYSYAAALGSPLSRSTTPDP 378
S NL SA+Q G S Y YAA LGS LSR+ TPDP
Sbjct: 224 ----------------------SNNNLS-PSASQGIGAPSPYCYAAVLGSSLSRNGTPDP 260
Query: 379 QHVARAPSPCLTPIGGGRVVAAEKRGMGNPDAYN-VSSGLNGS 504
Q +AR PSPCLTPIG GRV + +KR N +N V+SGLN S
Sbjct: 261 QGIARVPSPCLTPIGSGRVSSNDKRNTSNQSPFNGVTSGLNES 303
>dbj|BAB89558.1| putative pumilio/Mpt5 family RNA-binding protein [Oryza sativa
(japonica cultivar-group)]
Length = 1048
Score = 90.9 bits (224), Expect = 8e-18
Identities = 58/157 (36%), Positives = 94/157 (58%), Gaps = 3/157 (1%)
Frame = +1
Query: 28 SAEW---GGDGLIGLPGLGLGSKQKSLAEIFQDDMGHKTTIAGFHSRPASRNAFDENVDI 198
+AEW GGDGLIGL LG +Q+S A+I QD++G +T + SR SRN+F +N ++
Sbjct: 181 AAEWVDGGGDGLIGL---SLG-RQRSFADILQDNIGRRTPASEHPSRAVSRNSFLDNQEL 236
Query: 199 MTSAEADLADLCRDSSATDALRSGTNLQGSSATQNNGTQSSYSYAAALGSPLSRSTTPDP 378
+ SA++ + + +A R+ N+Q S + +S ++A+ LGS +SR+ TPD
Sbjct: 237 LNSADSQYS---MHNDILEAQRAVGNVQNVSGLPSINASASQTFASVLGSSISRNATPDS 293
Query: 379 QHVARAPSPCLTPIGGGRVVAAEKRGMGNPDAYNVSS 489
+V R PSP L P+ G R+ + EK+ + ++N +S
Sbjct: 294 HYVPRVPSPGLPPV-GVRINSNEKK-LNCSSSFNTAS 328
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.308 0.127 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,279,296
Number of Sequences: 1393205
Number of extensions: 10869129
Number of successful extensions: 36464
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 32425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36312
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
