Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000681A_C01 KMC000681A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_705199.1| hypothetical protein [Plasmodium falciparum 3D7... 33 2.3
ref|NP_113339.1| hypothetical protein [Guillardia theta] gi|2539... 31 8.9
gb|AAL67558.1|AF461121_9 O-antigen flippase Wzx [Escherichia coli] 31 8.9
>ref|NP_705199.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615444|emb|CAD52435.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1152
Score = 33.1 bits (74), Expect = 2.3
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Frame = +3
Query: 9 LSMLNNVRWEYILSRDKYPG--FNKNAESLHNLYTFMGKRLLGHEIETH*SQFYAVYYNV 182
+ LNN+ + YIL +D+Y N + E++ NL F TH F+ YY
Sbjct: 995 IDKLNNLNFIYILCQDEYQSKMNNSSKENIKNLLLF----------HTH---FFFYYYFC 1041
Query: 183 VTCRT*TKLIRHFDMAKNQLSAYKNRFYNRLN 278
+ + +I KN+ YK +YN N
Sbjct: 1042 ILQQNNYDIIHE---QKNKFDLYKENYYNICN 1070
>ref|NP_113339.1| hypothetical protein [Guillardia theta] gi|25396789|pir||H90095
hypothetical protein orf304 [imported] - Guillardia
theta nucleomorph gi|13794520|gb|AAK39895.1|AF165818_103
hypothetical protein [Guillardia theta]
Length = 304
Score = 31.2 bits (69), Expect = 8.9
Identities = 14/54 (25%), Positives = 23/54 (41%)
Frame = -2
Query: 297 LHKHTISSTCYKTYFCKLKADFWPYRNAE*VLFKFCTLPRCNKLHKTGFSVSLF 136
+H H +S + +F K + D W + V C L CN L+ + + F
Sbjct: 123 MHYHKLSKIFFIKFFNKNRIDMWKVNDKNLVYINTCNLYDCNSLNLSNQKMEFF 176
>gb|AAL67558.1|AF461121_9 O-antigen flippase Wzx [Escherichia coli]
Length = 425
Score = 31.2 bits (69), Expect = 8.9
Identities = 21/99 (21%), Positives = 42/99 (42%)
Frame = -3
Query: 356 LSLGLPGVSALKHPFMFVLYCISTXSVQPVIKPIFVS*KLIFGHIEMPNEFCLSSARYHV 177
L++ L + L+ + +++C+ + +I P F+S L E + L +
Sbjct: 289 LTVALNKQNILRLLYSIIIFCVFPCLIMVLISPFFLSLWLDNAEAESIIIWPLRLILIAI 348
Query: 176 VINCIKLALVCLYFMAQKPLTHKCVQIV*TLCILVKSWI 60
IN I + + + QK + C+ I LC+ W+
Sbjct: 349 AINSIYNIIYQIMLIKQKAIVILCINISSLLCVFPTIWL 387
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 448,357,395
Number of Sequences: 1393205
Number of extensions: 8816846
Number of successful extensions: 16645
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16627
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
