Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000680A_C01 KMC000680A_c01
(593 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568873.1| ubiquitin-specific protease 23 (UBP23), putativ... 50 2e-05
gb|AAG42761.1|AF302671_1 ubiquitin-specific protease 23 [Arabido... 50 2e-05
dbj|BAB08869.1| contains similarity to deubiquitinating enzyme~g... 50 2e-05
gb|AAO72607.1| putative ubiquitin-specific protease [Oryza sativ... 47 2e-04
emb|CAD38695.1| hypothetical protein [Homo sapiens] 36 0.32
>ref|NP_568873.1| ubiquitin-specific protease 23 (UBP23), putative; protein id:
At5g57990.1, supported by cDNA: gi_11993485 [Arabidopsis
thaliana]
Length = 859
Score = 50.4 bits (119), Expect = 2e-05
Identities = 21/42 (50%), Positives = 31/42 (73%)
Frame = -2
Query: 589 DEWDEELDKGKRKKLRTFKHSFDGPNIFQEIATEKFKSKRAK 464
DEWDEE D+GK+KK+R + S+ GPN FQ +A+++ K + K
Sbjct: 804 DEWDEEYDRGKKKKIRIKEESYRGPNPFQMLASKRQKETKKK 845
>gb|AAG42761.1|AF302671_1 ubiquitin-specific protease 23 [Arabidopsis thaliana]
Length = 859
Score = 50.4 bits (119), Expect = 2e-05
Identities = 21/42 (50%), Positives = 31/42 (73%)
Frame = -2
Query: 589 DEWDEELDKGKRKKLRTFKHSFDGPNIFQEIATEKFKSKRAK 464
DEWDEE D+GK+KK+R + S+ GPN FQ +A+++ K + K
Sbjct: 804 DEWDEEYDRGKKKKIRIKEESYRGPNPFQMLASKRQKETKKK 845
>dbj|BAB08869.1| contains similarity to deubiquitinating enzyme~gene_id:MTI20.25
[Arabidopsis thaliana]
Length = 829
Score = 50.4 bits (119), Expect = 2e-05
Identities = 21/42 (50%), Positives = 31/42 (73%)
Frame = -2
Query: 589 DEWDEELDKGKRKKLRTFKHSFDGPNIFQEIATEKFKSKRAK 464
DEWDEE D+GK+KK+R + S+ GPN FQ +A+++ K + K
Sbjct: 774 DEWDEEYDRGKKKKIRIKEESYRGPNPFQMLASKRQKETKKK 815
>gb|AAO72607.1| putative ubiquitin-specific protease [Oryza sativa (japonica
cultivar-group)]
Length = 842
Score = 47.0 bits (110), Expect = 2e-04
Identities = 20/32 (62%), Positives = 23/32 (71%)
Frame = -2
Query: 589 DEWDEELDKGKRKKLRTFKHSFDGPNIFQEIA 494
DEWDEE D+GK KK+R K + GPN FQE A
Sbjct: 785 DEWDEEYDRGKTKKIRNSKEDYGGPNPFQEEA 816
>emb|CAD38695.1| hypothetical protein [Homo sapiens]
Length = 630
Score = 36.2 bits (82), Expect = 0.32
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -2
Query: 589 DEWDEELDKGKRKKLRTFK-HSFDGPNIFQEIATEK 485
D+WDEE D+GK KK++ FK N FQ++ T +
Sbjct: 577 DDWDEEFDRGKEKKIKKFKREKRRNFNAFQKLQTRR 612
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,202,172
Number of Sequences: 1393205
Number of extensions: 9531879
Number of successful extensions: 20651
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20649
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
