Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000676A_C01 KMC000676A_c01
(624 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187495.1| hypothetical protein; protein id: At3g08830.1 [... 87 2e-16
dbj|BAC43436.1| unknown protein [Arabidopsis thaliana] 82 4e-15
ref|ZP_00117737.1| hypothetical protein [Cytophaga hutchinsonii] 82 6e-15
ref|NP_712240.1| D-alanine--D-alanine ligase [Leptospira interro... 54 2e-06
ref|NP_242487.1| D-alanyl-D-alanine ligase A [Bacillus haloduran... 54 2e-06
>ref|NP_187495.1| hypothetical protein; protein id: At3g08830.1 [Arabidopsis
thaliana] gi|6403499|gb|AAF07839.1|AC010871_15
hypothetical protein [Arabidopsis thaliana]
Length = 269
Score = 86.7 bits (213), Expect = 2e-16
Identities = 40/45 (88%), Positives = 43/45 (94%)
Frame = -2
Query: 620 WKGHSRWVEITVGVIGKRGSMHSLSPSVTVKETGDILSLEEKFQG 486
WKG RWVE+TVGVIGKRGSMHSLSPS+TVKE+GDILSLEEKFQG
Sbjct: 212 WKGRRRWVEMTVGVIGKRGSMHSLSPSLTVKESGDILSLEEKFQG 256
>dbj|BAC43436.1| unknown protein [Arabidopsis thaliana]
Length = 844
Score = 82.4 bits (202), Expect = 4e-15
Identities = 38/44 (86%), Positives = 41/44 (92%)
Frame = -2
Query: 620 WKGHSRWVEITVGVIGKRGSMHSLSPSVTVKETGDILSLEEKFQ 489
WKG RWVE+TVGVIGK GSMHSLSPS+TVKE+GDILSLEEKFQ
Sbjct: 794 WKGRRRWVEMTVGVIGKHGSMHSLSPSLTVKESGDILSLEEKFQ 837
>ref|ZP_00117737.1| hypothetical protein [Cytophaga hutchinsonii]
Length = 897
Score = 82.0 bits (201), Expect = 6e-15
Identities = 55/158 (34%), Positives = 90/158 (56%), Gaps = 12/158 (7%)
Frame = -2
Query: 617 KGHSR-WVEITVGVIGK---RGSMHS--LSPSVTVKETGDILSLEEKFQGGTGINLTPPP 456
KG+++ ++E+T G++ + +G++ PS ++ TGD+LSLEEKF G G N+TP
Sbjct: 741 KGNAKHFLEVTGGLMTRFNDKGNVEYEIFEPSESLA-TGDVLSLEEKFLAGEGQNITPAR 799
Query: 455 LSIMS---EKALQRCKKHIEQIANTLQLEGFSRIDAFVNV---DNGEVLIIEVNTVPGMT 294
+ E+ + ++++A L ++G++RIDAFV V + E +IIEVN++PGMT
Sbjct: 800 YTTNKADYEQVASEVRATLKRVAEVLNIQGYARIDAFVRVFENNRSETIIIEVNSLPGMT 859
Query: 293 PSTVLIHQALAEQPPLYPHQFFRTLLDLGSVRSM*KNA 180
P+T + HQ P+ F +L G R K A
Sbjct: 860 PATCIFHQTAIN--GYKPYDFIDNILTFGIEREKKKLA 895
Score = 45.8 bits (107), Expect = 5e-04
Identities = 35/117 (29%), Positives = 59/117 (49%)
Frame = -2
Query: 566 GSMHSLSPSVTVKETGDILSLEEKFQGGTGINLTPPPLSIMSEKALQRCKKHIEQIANTL 387
G+ +L P+ VK D K+ G +TP + I E+ ++ + ++ +TL
Sbjct: 328 GNPIALPPTGIVKGN-DFFDYRSKYLPGMSRKITP--IDIPGEQ-VELIRSECCRLYSTL 383
Query: 386 QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALAEQPPLYPHQFFRTLL 216
Q ++RID F++ + GEV + + NT GM PS+ HQ A + L P QF ++
Sbjct: 384 QFNVYARIDGFISPE-GEVFLNDPNTTSGMMPSSFFFHQ--AAEIGLNPSQFLTYII 437
>ref|NP_712240.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar lai
str. 56601] gi|24195760|gb|AAN49258.1|AE011378_5
D-alanine--D-alanine ligase [Leptospira interrogans
serovar lai str. 56601]
Length = 351
Score = 53.5 bits (127), Expect = 2e-06
Identities = 40/139 (28%), Positives = 74/139 (52%), Gaps = 3/139 (2%)
Frame = -2
Query: 599 VEITVGVIGKR--GSMHSLS-PSVTVKETGDILSLEEKFQGGTGINLTPPPLSIMSEKAL 429
+E++ GV+ + G ++ P+ + G+ E K++ G +TP +S E+ +
Sbjct: 219 IEVSCGVLERYRDGKFKKIALPATEIVPGGEFFDFESKYKQGGSHEITPARIS---EQEM 275
Query: 428 QRCKKHIEQIANTLQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALAEQPP 249
+R ++ +L G+SR D F+ V NGE I+E NT+PGMT ++++ QA A
Sbjct: 276 KRVQELAIAAHRSLGCSGYSRTD-FIIV-NGEPHILETNTLPGMTETSLIPQQAKA--AG 331
Query: 248 LYPHQFFRTLLDLGSVRSM 192
+ + F L+++G RS+
Sbjct: 332 ISMEEVFSDLIEIGLKRSL 350
>ref|NP_242487.1| D-alanyl-D-alanine ligase A [Bacillus halodurans]
gi|20137662|sp|Q9KCF0|DDL_BACHD D-alanine--D-alanine
ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase)
gi|25293544|pir||E83852 D-alanyl-D-alanine ligase A ddlA
[imported] - Bacillus halodurans (strain C-125)
gi|10174238|dbj|BAB05340.1| D-alanyl-D-alanine ligase A
[Bacillus halodurans]
Length = 305
Score = 53.5 bits (127), Expect = 2e-06
Identities = 32/105 (30%), Positives = 54/105 (50%)
Frame = -2
Query: 596 EITVGVIGKRGSMHSLSPSVTVKETGDILSLEEKFQGGTGINLTPPPLSIMSEKALQRCK 417
E+TV V+G +G SL P V + + E K+ G ++ P +S +Q+
Sbjct: 179 EVTVAVLGNKGEERSL-PVVEIVPKNKLYDYESKYAPGMSEHIVPARISEEHTAYVQQAA 237
Query: 416 KHIEQIANTLQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 282
Q L + +SR+D V D + +I++VNT+PGMTP+++
Sbjct: 238 VRAHQ---ALGCDVYSRVDFIVPNDGSDPVILKVNTLPGMTPTSL 279
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,098,776
Number of Sequences: 1393205
Number of extensions: 11940815
Number of successful extensions: 32333
Number of sequences better than 10.0: 177
Number of HSP's better than 10.0 without gapping: 31147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32308
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
