Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000670A_C01 KMC000670A_c01
(876 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC56012.1| P0705A05.31 [Oryza sativa (japonica cultivar-gro... 170 3e-41
ref|NP_198287.1| putative protein; protein id: At5g32470.1 [Arab... 120 3e-26
ref|NP_595901.1| hypothetical protein [Schizosaccharomyces pombe... 45 0.001
gb|EAA15759.1| hypothetical protein [Plasmodium yoelii yoelii] 45 0.001
gb|EAA34656.1| hypothetical protein [Neurospora crassa] 42 0.009
>dbj|BAC56012.1| P0705A05.31 [Oryza sativa (japonica cultivar-group)]
Length = 564
Score = 170 bits (430), Expect = 3e-41
Identities = 83/130 (63%), Positives = 108/130 (82%)
Frame = -3
Query: 874 NIHANDFTYEGSVSTGDIVKKVESPIDKVQQFRSILKNCNNDKKKLTVYIGDSLGDLLCL 695
NIH+N+F +EGSVSTG I +++ESP+DK ++F+SI + + L+VYIGDS+GDLLCL
Sbjct: 431 NIHSNEFAFEGSVSTGHINRQMESPLDKAEKFKSIKSDVGSTGTLLSVYIGDSVGDLLCL 490
Query: 694 LEADVGIVIGSSSSLRTVGTQFGVSFVPLFSGLVKKQKDYIEGSSSNWKGKSGILYTVSS 515
LEAD+GIV+GSS++LR VG QFGVSFVPLF+GLV+KQ+ + SS +K +SGILYTVSS
Sbjct: 491 LEADIGIVVGSSTTLRRVGKQFGVSFVPLFTGLVEKQRRIEKEESSIFKARSGILYTVSS 550
Query: 514 WAEVHAFILG 485
W+EV AFILG
Sbjct: 551 WSEVQAFILG 560
>ref|NP_198287.1| putative protein; protein id: At5g32470.1 [Arabidopsis thaliana]
Length = 529
Score = 120 bits (301), Expect = 3e-26
Identities = 67/130 (51%), Positives = 80/130 (61%), Gaps = 1/130 (0%)
Frame = -3
Query: 871 IHANDFTYEGSVSTGDIVKKVESPIDKVQQFRSILKNCNNDKKKLTVYIGDSLGDLLCLL 692
+HAN+FT+E S+STG DLLCLL
Sbjct: 437 VHANEFTFEESISTG---------------------------------------DLLCLL 457
Query: 691 EADVGIVIGSSSSLRTVGTQFGVSFVPLFSGLVKKQKDYIEGSSSN-WKGKSGILYTVSS 515
EAD+GIV+ SSSSLR VG+ FGVSFVPLFSG+V+KQK + E SSS+ WKG SG LYTVSS
Sbjct: 458 EADIGIVVSSSSSLRRVGSHFGVSFVPLFSGIVQKQKQHTEESSSSAWKGLSGTLYTVSS 517
Query: 514 WAEVHAFILG 485
WAE+H+F LG
Sbjct: 518 WAEIHSFALG 527
>ref|NP_595901.1| hypothetical protein [Schizosaccharomyces pombe]
gi|7491438|pir||T39735 hypothetical protein SPBC17G9.12c
- fission yeast (Schizosaccharomyces pombe)
gi|5738533|emb|CAB52810.1| hypothetical protein
[Schizosaccharomyces pombe]
Length = 274
Score = 45.1 bits (105), Expect = 0.001
Identities = 39/136 (28%), Positives = 63/136 (45%), Gaps = 8/136 (5%)
Frame = -3
Query: 871 IHANDFTYEGSVST--GDIVKKVESPI-----DKVQQFRSILKNCNNDKKKLTVYIGDSL 713
+HANDF ++ S +T G I+ + S + DKV++FR I++ VYIGDS
Sbjct: 149 VHANDFDFDTSTNTTNGRILARNASSLLMNSTDKVREFRRIVQTDAVSSPLNVVYIGDSP 208
Query: 712 GDLLCLLEADVGIVIGSSSSLRTVGTQF-GVSFVPLFSGLVKKQKDYIEGSSSNWKGKSG 536
D CL + + I++ S+ + ++F V V + V+K + G
Sbjct: 209 TDFGCLQISPISILMRSNQKYYDILSRFEDVQLVDISEFPVQKA---VPGKK-------- 257
Query: 535 ILYTVSSWAEVHAFIL 488
I+YT S W + L
Sbjct: 258 IIYTCSDWCAIQKAFL 273
>gb|EAA15759.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 166
Score = 45.1 bits (105), Expect = 0.001
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 24/138 (17%)
Frame = -3
Query: 826 DIVKKVE--SPIDKVQQFRSILKNCNNDKKKLTVYIGDSLGDLLCLLEADVGIVIGSSSS 653
++V+K+ S DK I +N KL+ +IGDS+ DL +L D+GI++G ++
Sbjct: 22 NMVEKINIVSIFDKTVVINKIFSLLDNLNYKLSAFIGDSIIDLDAMLSVDIGIILGKNTF 81
Query: 652 LRTVGTQFGVSFVPLFSG-----LVKKQKDYIEGSSSNWKGKS----------------- 539
L + + PL +K++++ + S+ K ++
Sbjct: 82 LLKFCEKHDILIKPLAFASAKIEYLKRKRNKNNSTESDIKEETKFDPNYKINNELFDDNK 141
Query: 538 GILYTVSSWAEVHAFILG 485
ILY+ SWAE+ F G
Sbjct: 142 KILYSTESWAEIGIFFFG 159
>gb|EAA34656.1| hypothetical protein [Neurospora crassa]
Length = 870
Score = 42.4 bits (98), Expect = 0.009
Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Frame = -3
Query: 796 DKVQQFRSIL--KNCNNDKKKLTVYIGDSLGDLLCLLEADVGIVI 668
DK++ F ++L + KK+ +VY GDS+ DL CLL AD GIV+
Sbjct: 208 DKLEGFETMLLEEAAGESKKRKSVYFGDSVTDLECLLRADTGIVV 252
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 714,756,020
Number of Sequences: 1393205
Number of extensions: 15118429
Number of successful extensions: 43296
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 41216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43244
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 47103382053
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
