Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000666A_C02 KMC000666A_c02
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191774.1| multidrug resistance P-glycoprotein, putative; ... 146 1e-34
ref|NP_182223.1| ABC transporter family protein; protein id: At2... 144 5e-34
ref|NP_192091.1| multidrug resistance P-glycoprotein, putative; ... 140 1e-32
pir||T52319 P-glycoprotein-like protein pgp3 [imported] - Arabid... 140 1e-32
ref|NP_171753.1| multidrug resistance P-glycoprotein, putative; ... 139 3e-32
>ref|NP_191774.1| multidrug resistance P-glycoprotein, putative; protein id:
At3g62150.1 [Arabidopsis thaliana]
gi|11277353|pir||T48007 P-glycoprotein homolog T17J13.110
[similarity] - Arabidopsis thaliana
gi|6899925|emb|CAB71875.1| P-glycoprotein-like proetin
[Arabidopsis thaliana]
Length = 1292
Score = 146 bits (369), Expect = 1e-34
Identities = 73/90 (81%), Positives = 83/90 (92%)
Frame = -3
Query: 550 IKSPNILLLDEXTSALDVESERVVQDALDKVMVNRTTVIVAHRLSTIKSADVIIVLKNGV 371
+K P +LLLDE TSALD ESERVVQDALD+VMVNRTTV+VAHRLSTIK+ADVI V+KNGV
Sbjct: 1203 VKDPKVLLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGV 1262
Query: 370 IVEKGRHETLISIKDGYYASLVQLHTTATT 281
IVEKG+HETLI+IKDG YASLVQLH +A+T
Sbjct: 1263 IVEKGKHETLINIKDGVYASLVQLHLSAST 1292
Score = 109 bits (273), Expect = 2e-23
Identities = 52/84 (61%), Positives = 68/84 (80%)
Frame = -3
Query: 550 IKSPNILLLDEXTSALDVESERVVQDALDKVMVNRTTVIVAHRLSTIKSADVIIVLKNGV 371
+K P ILLLDE TSALD ESER+VQ+ALD++MVNRTTV+VAHRLST+++AD+I V+ G
Sbjct: 557 LKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHQGK 616
Query: 370 IVEKGRHETLISIKDGYYASLVQL 299
IVEKG H L+ +G Y+ L++L
Sbjct: 617 IVEKGSHSELLRDPEGAYSQLIRL 640
>ref|NP_182223.1| ABC transporter family protein; protein id: At2g47000.1 [Arabidopsis
thaliana] gi|7442647|pir||T02187 probable ABC transporter
[imported] - Arabidopsis thaliana
gi|3522943|gb|AAC34225.1| putative ABC transporter
[Arabidopsis thaliana]
Length = 1286
Score = 144 bits (364), Expect = 5e-34
Identities = 71/90 (78%), Positives = 82/90 (90%)
Frame = -3
Query: 550 IKSPNILLLDEXTSALDVESERVVQDALDKVMVNRTTVIVAHRLSTIKSADVIIVLKNGV 371
+K P +LLLDE TSALD ESERVVQDALD+VMVNRTT++VAHRLSTIK+ADVI V+KNGV
Sbjct: 1197 VKDPKVLLLDEATSALDAESERVVQDALDRVMVNRTTIVVAHRLSTIKNADVIAVVKNGV 1256
Query: 370 IVEKGRHETLISIKDGYYASLVQLHTTATT 281
IVEKG+H+TLI+IKDG YASLVQLH TA +
Sbjct: 1257 IVEKGKHDTLINIKDGVYASLVQLHLTAAS 1286
Score = 110 bits (274), Expect = 1e-23
Identities = 53/84 (63%), Positives = 68/84 (80%)
Frame = -3
Query: 550 IKSPNILLLDEXTSALDVESERVVQDALDKVMVNRTTVIVAHRLSTIKSADVIIVLKNGV 371
+K P ILLLDE TSALD ESERVVQ+ALD++MVNRTTV+VAHRLST+++AD+I V+ G
Sbjct: 538 LKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHQGK 597
Query: 370 IVEKGRHETLISIKDGYYASLVQL 299
IVEKG H L+ +G Y+ L++L
Sbjct: 598 IVEKGSHTELLKDPEGAYSQLIRL 621
>ref|NP_192091.1| multidrug resistance P-glycoprotein, putative; protein id:
At4g01820.1 [Arabidopsis thaliana]
gi|25297452|pir||D85023 P-glycoprotein-like protein pgp3
[imported] - Arabidopsis thaliana
gi|4558551|gb|AAD22644.1|AC007138_8 P-glycoprotein-like
protein [Arabidopsis thaliana] gi|7268566|emb|CAB80675.1|
P-glycoprotein-like protein pgp3 [Arabidopsis thaliana]
Length = 1229
Score = 140 bits (352), Expect = 1e-32
Identities = 71/90 (78%), Positives = 81/90 (89%)
Frame = -3
Query: 550 IKSPNILLLDEXTSALDVESERVVQDALDKVMVNRTTVIVAHRLSTIKSADVIIVLKNGV 371
+K P ILLLDE TSALD ESERVVQDALD+VMVNRTTV+VAHRLSTIK+ADVI V+KNGV
Sbjct: 1140 VKEPKILLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGV 1199
Query: 370 IVEKGRHETLISIKDGYYASLVQLHTTATT 281
IVEKG HETLI+I+ G YASLVQLH +A++
Sbjct: 1200 IVEKGTHETLINIEGGVYASLVQLHISASS 1229
Score = 107 bits (268), Expect = 7e-23
Identities = 53/84 (63%), Positives = 68/84 (80%)
Frame = -3
Query: 550 IKSPNILLLDEXTSALDVESERVVQDALDKVMVNRTTVIVAHRLSTIKSADVIIVLKNGV 371
+K P ILLLDE TSALD ESERVVQ+ALD+VM++RTTVIVAHRLST+++AD+I V+ G
Sbjct: 502 LKDPRILLLDEATSALDAESERVVQEALDRVMMSRTTVIVAHRLSTVRNADMIAVIHRGK 561
Query: 370 IVEKGRHETLISIKDGYYASLVQL 299
IVE+G H L+ +G YA L++L
Sbjct: 562 IVEEGSHSELLKDHEGAYAQLIRL 585
>pir||T52319 P-glycoprotein-like protein pgp3 [imported] - Arabidopsis thaliana
gi|2739309|emb|CAA75922.1| P-glycoprotein-like protein
[Arabidopsis thaliana]
Length = 1229
Score = 140 bits (352), Expect = 1e-32
Identities = 71/90 (78%), Positives = 81/90 (89%)
Frame = -3
Query: 550 IKSPNILLLDEXTSALDVESERVVQDALDKVMVNRTTVIVAHRLSTIKSADVIIVLKNGV 371
+K P ILLLDE TSALD ESERVVQDALD+VMVNRTTV+VAHRLSTIK+ADVI V+KNGV
Sbjct: 1140 VKEPKILLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGV 1199
Query: 370 IVEKGRHETLISIKDGYYASLVQLHTTATT 281
IVEKG HETLI+I+ G YASLVQLH +A++
Sbjct: 1200 IVEKGTHETLINIEGGVYASLVQLHISASS 1229
Score = 107 bits (268), Expect = 7e-23
Identities = 53/84 (63%), Positives = 68/84 (80%)
Frame = -3
Query: 550 IKSPNILLLDEXTSALDVESERVVQDALDKVMVNRTTVIVAHRLSTIKSADVIIVLKNGV 371
+K P ILLLDE TSALD ESERVVQ+ALD+VM++RTTVIVAHRLST+++AD+I V+ G
Sbjct: 502 LKDPRILLLDEATSALDAESERVVQEALDRVMMSRTTVIVAHRLSTVRNADMIAVIHRGK 561
Query: 370 IVEKGRHETLISIKDGYYASLVQL 299
IVE+G H L+ +G YA L++L
Sbjct: 562 IVEEGSHSELLKDHEGAYAQLIRL 585
>ref|NP_171753.1| multidrug resistance P-glycoprotein, putative; protein id:
At1g02520.1 [Arabidopsis thaliana]
gi|25297455|pir||E86155 probable ABC transporter
[imported] - Arabidopsis thaliana
gi|9972378|gb|AAG10628.1|AC022521_6 Putative ABC
transporter [Arabidopsis thaliana]
Length = 1278
Score = 139 bits (349), Expect = 3e-32
Identities = 70/89 (78%), Positives = 78/89 (86%)
Frame = -3
Query: 550 IKSPNILLLDEXTSALDVESERVVQDALDKVMVNRTTVIVAHRLSTIKSADVIIVLKNGV 371
+K P ILLLDE TSALD ESERVVQDALD+VMVNRTT++VAHRLSTIK+ADVI V+KNGV
Sbjct: 1189 VKEPKILLLDEATSALDAESERVVQDALDRVMVNRTTIVVAHRLSTIKNADVIAVVKNGV 1248
Query: 370 IVEKGRHETLISIKDGYYASLVQLHTTAT 284
I EKG HETLI I+ G YASLVQLH TA+
Sbjct: 1249 IAEKGTHETLIKIEGGVYASLVQLHMTAS 1277
Score = 110 bits (275), Expect = 1e-23
Identities = 54/84 (64%), Positives = 68/84 (80%)
Frame = -3
Query: 550 IKSPNILLLDEXTSALDVESERVVQDALDKVMVNRTTVIVAHRLSTIKSADVIIVLKNGV 371
+K P ILLLDE TSALD ESERVVQ+ALD+VMVNRTTVIVAHRLST+++AD+I V+ G
Sbjct: 535 LKDPRILLLDEATSALDAESERVVQEALDRVMVNRTTVIVAHRLSTVRNADMIAVIHRGK 594
Query: 370 IVEKGRHETLISIKDGYYASLVQL 299
+VEKG H L+ +G Y+ L++L
Sbjct: 595 MVEKGSHSELLKDSEGAYSQLIRL 618
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 424,146,922
Number of Sequences: 1393205
Number of extensions: 8539760
Number of successful extensions: 24660
Number of sequences better than 10.0: 4309
Number of HSP's better than 10.0 without gapping: 23005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24354
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
