Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000658A_C01 KMC000658A_c01
(488 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA72672.1| hoxV [Oligotropha carboxidovorans] 33 1.7
ref|NP_623238.1| predicted ATPases of the HSP70 class involved i... 31 6.5
>emb|CAA72672.1| hoxV [Oligotropha carboxidovorans]
Length = 102
Score = 33.1 bits (74), Expect = 1.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 59 TW-F*PAWDHGSPGPITVQIMRSPIHHKADTPVSVHKPTR 175
TW F P G+PGP+ + +P+ H +TPVSV R
Sbjct: 52 TWNFSPRDQAGTPGPVEQALRGAPVRHGEETPVSVQHIVR 91
>ref|NP_623238.1| predicted ATPases of the HSP70 class involved in cell division
[Thermoanaerobacter tengcongensis]
gi|20516649|gb|AAM24842.1| predicted ATPases of the
HSP70 class involved in cell division
[Thermoanaerobacter tengcongensis]
Length = 408
Score = 31.2 bits (69), Expect = 6.5
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -3
Query: 129 IGLLIICTVIGPGDP*SQAGQNHVINMRHHPSGG 28
IG +CT+IG GD + G+ H++ + ++PS G
Sbjct: 10 IGTSKVCTIIGEGD---KTGELHIVGIGYYPSTG 40
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,135,894
Number of Sequences: 1393205
Number of extensions: 9654776
Number of successful extensions: 19866
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19847
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
