Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000656A_C03 KMC000656A_c03
(671 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566359.1| expressed protein; protein id: At3g09850.1, sup... 60 2e-08
ref|NP_594091.1| hypothetical protein [Schizosaccharomyces pombe... 49 8e-05
gb|AAH33080.1| tuftelin interacting protein 11 [Homo sapiens] 39 0.064
ref|NP_036275.1| tuftelin interacting protein 11; similar to tuf... 39 0.064
ref|NP_181762.1| hypothetical protein; protein id: At2g42330.1 [... 38 0.11
>ref|NP_566359.1| expressed protein; protein id: At3g09850.1, supported by cDNA:
gi_15982780 [Arabidopsis thaliana]
gi|6681334|gb|AAF23251.1|AC015985_9 hypothetical protein
[Arabidopsis thaliana] gi|15982781|gb|AAL09738.1|
AT3g09850/F8A24_10 [Arabidopsis thaliana]
gi|23308485|gb|AAN18212.1| At3g09850/F8A24_10
[Arabidopsis thaliana]
Length = 781
Score = 60.5 bits (145), Expect = 2e-08
Identities = 28/61 (45%), Positives = 42/61 (67%)
Frame = -3
Query: 531 ISFVEFNTTGFG*NLMARMVYVEGEGLWKNCQGMALPIKVIQRPKSLDLGVQFSCSPHEP 352
I E +T GFG +MA+M +++G GL K+ +G+A PI+ +QRPKSL LG+ FS +P
Sbjct: 628 IGAFEVHTRGFGSKMMAKMGFIDGGGLGKDGKGIAQPIEAVQRPKSLGLGLDFSIDTEDP 687
Query: 351 A 349
+
Sbjct: 688 S 688
Score = 52.0 bits (123), Expect = 7e-06
Identities = 23/54 (42%), Positives = 36/54 (66%)
Frame = -3
Query: 537 KRISFVEFNTTGFG*NLMARMVYVEGEGLWKNCQGMALPIKVIQRPKSLDLGVQ 376
KR+ E +TTGFG +MARM +VEG GL + QG+ P+ ++RP++ +G +
Sbjct: 727 KRLGAFEQHTTGFGSRMMARMGFVEGSGLGRESQGIVNPLVAVRRPRARGIGAE 780
>ref|NP_594091.1| hypothetical protein [Schizosaccharomyces pombe]
gi|11359115|pir||T50072 hypothetical protein
SPAC1486.03c [imported] - fission yeast
(Schizosaccharomyces pombe) gi|6523773|emb|CAB62413.1|
G-patch domain; putative septin interacting by similar
to D. melanogaster SIP1; no apparent S. cerevisiae
ortholog [Schizosaccharomyces pombe]
Length = 797
Score = 48.5 bits (114), Expect = 8e-05
Identities = 22/52 (42%), Positives = 35/52 (67%)
Frame = -3
Query: 537 KRISFVEFNTTGFG*NLMARMVYVEGEGLWKNCQGMALPIKVIQRPKSLDLG 382
K I ++FNTTGFG ++ +M Y +G+GL N +G+A P++ RP+ + LG
Sbjct: 106 KNIPKMKFNTTGFGAKMLEKMGYKQGQGLGANAEGIAEPVQSKLRPERVGLG 157
>gb|AAH33080.1| tuftelin interacting protein 11 [Homo sapiens]
Length = 837
Score = 38.9 bits (89), Expect = 0.064
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = -3
Query: 528 SFVEF-----NTTGFG*NLMARMVYVEGEGLWKNCQGMALPIKVIQRPKSLDLGVQFSCS 364
SF++F +T G G L+ +M YV G GL KN QG+ PI+ QR +G S
Sbjct: 138 SFMDFGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIEAKQRKGKGAVGAYGSER 197
Query: 363 PHEPATEGAVIKSSRIGALENIPKNLDQ 280
+ + V+ S A E K L Q
Sbjct: 198 TTQSMQDFPVVDSEE-EAEEEFQKELSQ 224
>ref|NP_036275.1| tuftelin interacting protein 11; similar to tuftelin-interacting
protein; tuftelin-interacting protein [Homo sapiens]
gi|22096235|sp|Q9UBB9|TP11_HUMAN Tuftelin-interacting
protein 11 (HSPC006) gi|7512535|pir||T12531 hypothetical
protein DKFZp434B194.1 - human
gi|4886427|emb|CAB43360.1| hypothetical protein [Homo
sapiens] gi|5262599|emb|CAB45740.1| hypothetical protein
[Homo sapiens] gi|15079541|gb|AAH11599.1|AAH11599
Similar to tuftelin-interacting protein [Homo sapiens]
Length = 837
Score = 38.9 bits (89), Expect = 0.064
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = -3
Query: 528 SFVEF-----NTTGFG*NLMARMVYVEGEGLWKNCQGMALPIKVIQRPKSLDLGVQFSCS 364
SF++F +T G G L+ +M YV G GL KN QG+ PI+ QR +G S
Sbjct: 138 SFMDFGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIEAKQRKGKGAVGAYGSER 197
Query: 363 PHEPATEGAVIKSSRIGALENIPKNLDQ 280
+ + V+ S A E K L Q
Sbjct: 198 TTQSMQDFPVVDSEE-EAEEEFQKELSQ 224
>ref|NP_181762.1| hypothetical protein; protein id: At2g42330.1 [Arabidopsis
thaliana] gi|25354197|pir||F84852 hypothetical protein
At2g42330 [imported] - Arabidopsis thaliana
gi|4567305|gb|AAD23716.1| hypothetical protein
[Arabidopsis thaliana]
Length = 752
Score = 38.1 bits (87), Expect = 0.11
Identities = 22/52 (42%), Positives = 34/52 (65%)
Frame = -3
Query: 537 KRISFVEFNTTGFG*NLMARMVYVEGEGLWKNCQGMALPIKVIQRPKSLDLG 382
K+ +F +F+ G G L+ +M Y +G GL KN QG+ PI+V RPK++ +G
Sbjct: 95 KKENFEKFSG-GIGMKLLEKMGY-KGRGLGKNQQGIVAPIEVQLRPKNMGMG 144
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 513,846,439
Number of Sequences: 1393205
Number of extensions: 10244115
Number of successful extensions: 15512
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 15276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15512
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29421376608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
