Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000650A_C01 KMC000650A_c01
(591 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197376.1| putative protein; protein id: At5g18750.1 [Arab... 99 5e-20
pir||T01797 hypothetical protein A_TM021B04.9 - Arabidopsis thal... 65 8e-10
ref|NP_198076.1| putative protein; protein id: At5g27240.1 [Arab... 65 8e-10
dbj|BAB61155.1| B1045D11.23 [Oryza sativa (japonica cultivar-gro... 63 3e-09
dbj|BAB90832.1| heat shock protein-like [Oryza sativa (japonica ... 62 7e-09
>ref|NP_197376.1| putative protein; protein id: At5g18750.1 [Arabidopsis thaliana]
Length = 884
Score = 98.6 bits (244), Expect = 5e-20
Identities = 49/99 (49%), Positives = 68/99 (68%), Gaps = 1/99 (1%)
Frame = -3
Query: 589 YRKWTAKIKPSDLQTWEYDIVQILDVNDLRIAVVHLELVKGFPSVFKVQKNGGSAVTMKI 410
Y+ W+ IK + L+ EY++V++LD ND I V+ LE V GF SVFK + GG V KI
Sbjct: 782 YKNWSETIKATSLKRCEYEVVEVLDDNDSHIEVMLLEQVDGFISVFKEKLEGGIDVKKKI 841
Query: 409 PKAELLRFSHQIPAIKLT-EKHGSVKGCCELDPGALPMH 296
P+ ELLRFSH +PA +LT E+ G+++G ELDP A P++
Sbjct: 842 PRCELLRFSHYVPAFRLTGERDGALRGYVELDPSAFPLN 880
Score = 64.3 bits (155), Expect = 1e-09
Identities = 40/85 (47%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Frame = -3
Query: 544 WEYDIVQILD--VNDLRIAVVHLELVKGFPSVFKVQKNGGSAVTMKIPKAELLRFSHQIP 371
+EY+ V+IL V + I V L +KGF SVF GG + T++IP ELLRFSH IP
Sbjct: 539 YEYEFVEILSEYVEGVAIQVAFLRKIKGFTSVFCRIAPGGGSDTIQIPPHELLRFSHSIP 598
Query: 370 AIKLTEKHGS--VKGCCELDPGALP 302
+ KLT K G+ G E D ALP
Sbjct: 599 STKLTGKEGNGVPIGSYEFDTAALP 623
>pir||T01797 hypothetical protein A_TM021B04.9 - Arabidopsis thaliana
gi|2191187|gb|AAB61072.1| contains similarity to a
DNAJ-like domain [Arabidopsis thaliana]
Length = 1609
Score = 64.7 bits (156), Expect = 8e-10
Identities = 37/89 (41%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Frame = -3
Query: 544 WEYDIVQIL-DVNDLR-IAVVHLELVKGFPSVFKVQKNGGSAVTMKIPKAELLRFSHQIP 371
+EYD V++L + ND + V L V+GF S+F+ G + ++IP +++LRFSH++P
Sbjct: 603 YEYDFVEVLSNFNDENGLGVGFLGKVEGFVSLFRQDAQDG-VLQLQIPPSQMLRFSHKVP 661
Query: 370 AIKLT--EKHGSVKGCCELDPGALPMHYF 290
+ K+T E+ G GC ELDP ALP F
Sbjct: 662 SFKMTGKEREGVPPGCFELDPAALPKELF 690
>ref|NP_198076.1| putative protein; protein id: At5g27240.1 [Arabidopsis thaliana]
Length = 1104
Score = 64.7 bits (156), Expect = 8e-10
Identities = 37/89 (41%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Frame = -3
Query: 544 WEYDIVQIL-DVNDLR-IAVVHLELVKGFPSVFKVQKNGGSAVTMKIPKAELLRFSHQIP 371
+EYD V++L + ND + V L V+GF S+F+ G + ++IP +++LRFSH++P
Sbjct: 603 YEYDFVEVLSNFNDENGLGVGFLGKVEGFVSLFRQDAQDG-VLQLQIPPSQMLRFSHKVP 661
Query: 370 AIKLT--EKHGSVKGCCELDPGALPMHYF 290
+ K+T E+ G GC ELDP ALP F
Sbjct: 662 SFKMTGKEREGVPPGCFELDPAALPKELF 690
Score = 39.3 bits (90), Expect = 0.038
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = -3
Query: 550 QTWEYDIVQILDVNDLRIAVVHLELVKGFPSVFKVQKNGGS-AVTMKIPKAELLRFSHQI 374
+T E +IV++++ ++ RI + L KGF + +++ S A + IPK E+ RFSHQI
Sbjct: 1013 ETEELEIVEVVETDEQRIQAMTLT-AKGFNNKPLYRRSEESNASFIDIPKTEVCRFSHQI 1071
Query: 373 PAIK 362
PA +
Sbjct: 1072 PAFR 1075
>dbj|BAB61155.1| B1045D11.23 [Oryza sativa (japonica cultivar-group)]
gi|14587233|dbj|BAB61158.1| B1111C09.3 [Oryza sativa
(japonica cultivar-group)]
Length = 1007
Score = 62.8 bits (151), Expect = 3e-09
Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Frame = -3
Query: 589 YRKWTAKIKPSDLQTWEYDIVQILDVNDLRIAVVHLELVKGFPSVFKVQKNGGSAVTMKI 410
Y W PS T+EY I +I D + V+ L V G+ +VFK G T++I
Sbjct: 905 YNNWAPGWVPSSKDTFEYTIGEITDCTEASTKVLLLTRVDGYRAVFKPDSVRG---TLEI 961
Query: 409 PKAELLRFSHQIPAIKLT-EKHGSVKGCCELDPGALP 302
P E +RFSH IP+ +LT E G + G ELDP ++P
Sbjct: 962 PTNENIRFSHLIPSFRLTKENGGKLCGFYELDPASVP 998
Score = 47.4 bits (111), Expect = 1e-04
Identities = 36/87 (41%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Frame = -3
Query: 550 QTWEYDIVQILD--VNDLRIAVVHLELVKGFPSVFKVQKNGGSAVTMKIPKAELLRFSHQ 377
+ +EY+ V+IL + AV L +KGF S+F K S V IP +E+LRFSH
Sbjct: 629 RAYEYEAVEILSNFTVEAGAAVGPLVKIKGFVSLFAKVKEKPSFV---IPPSEMLRFSHS 685
Query: 376 IP--AIKLTEKHGSVKGCCELDPGALP 302
IP K EK G G ELD +LP
Sbjct: 686 IPFFRTKGDEKVGVAGGFLELDTASLP 712
>dbj|BAB90832.1| heat shock protein-like [Oryza sativa (japonica cultivar-group)]
Length = 744
Score = 61.6 bits (148), Expect = 7e-09
Identities = 43/103 (41%), Positives = 59/103 (56%), Gaps = 7/103 (6%)
Frame = -3
Query: 589 YRKWTAK---IKPSDLQTWEYDIVQILDVND--LRIAVVHLELVKGFPSVFKVQKNGGSA 425
Y+ W+ + P D ++YD+VQ+LD + I+V+ + V GF SVF + +
Sbjct: 632 YQNWSPEWNTCTPDDT-IYKYDLVQVLDSYNPSAGISVMPIVKVPGFVSVFTPLLDPTKS 690
Query: 424 VTMKIPKAELLRFSHQIPAIKLT--EKHGSVKGCCELDPGALP 302
T IPK E+LRFSHQ+P LT E S KGC ELDPG+ P
Sbjct: 691 RT--IPKEEMLRFSHQVPFHVLTGEEAKNSPKGCYELDPGSTP 731
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 501,688,921
Number of Sequences: 1393205
Number of extensions: 10413609
Number of successful extensions: 23647
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 23066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23619
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
