Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000648A_C02 KMC000648A_c02
(688 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL31888.1|AF419556_1 At2g32080/F22D22.17 [Arabidopsis thaliana] 174 8e-43
ref|NP_565736.1| putative purine-rich single-stranded DNA-bindin... 174 8e-43
dbj|BAB03442.1| unnamed protein product [Oryza sativa (japonica ... 158 6e-38
pir||G84728 hypothetical protein At2g32080 [imported] - Arabidop... 67 2e-10
ref|NP_524624.1| Purine-rich binding protein-alpha CG1507-PB gi|... 50 3e-05
>gb|AAL31888.1|AF419556_1 At2g32080/F22D22.17 [Arabidopsis thaliana]
Length = 295
Score = 174 bits (442), Expect = 8e-43
Identities = 85/102 (83%), Positives = 94/102 (91%)
Frame = -3
Query: 686 TSSELNVDRSVDLPAQDEIGNLGVSKVIRADQKRFFFDLGSHNRGHFLRISEVAGSDRSS 507
+SSE NVDR++D P Q+E G GVSKVIRADQKRFFFDLG++NRGHFLRISEVAGSDRSS
Sbjct: 194 SSSEHNVDRTIDSPGQEETGMTGVSKVIRADQKRFFFDLGNNNRGHFLRISEVAGSDRSS 253
Query: 506 IILPLSGLKQFHEIVGHFVEITKDRIEGMAVANVRTVDPPQR 381
IILPLSGLKQFHE++GHFVEITKD+IEGM ANVRTVDPPQR
Sbjct: 254 IILPLSGLKQFHEVIGHFVEITKDKIEGMTGANVRTVDPPQR 295
Score = 52.0 bits (123), Expect = 8e-06
Identities = 23/56 (41%), Positives = 38/56 (67%)
Frame = -3
Query: 617 VSKVIRADQKRFFFDLGSHNRGHFLRISEVAGSDRSSIILPLSGLKQFHEIVGHFV 450
VSK ++ + K F+FDL + RG +L+ISE + RS+II+P SG+ F ++ ++V
Sbjct: 32 VSKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYYV 87
Score = 44.3 bits (103), Expect = 0.002
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 13/68 (19%)
Frame = -3
Query: 614 SKVIRADQKRFFFDLGSHNRGHFLRISEVAGS-DRSSIILPLSG------------LKQF 474
SK ++ D K F+FD+G + RG FL++SE + S +RS+II+P L +
Sbjct: 96 SKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSPDEGWAAFRNILAEI 155
Query: 473 HEIVGHFV 450
HE G FV
Sbjct: 156 HEASGLFV 163
>ref|NP_565736.1| putative purine-rich single-stranded DNA-binding protein; protein
id: At2g32080.1, supported by cDNA: gi_15450692,
supported by cDNA: gi_17386137, supported by cDNA:
gi_5081611 [Arabidopsis thaliana]
gi|5081612|gb|AAD39465.1|AF136152_1 PUR alpha-1
[Arabidopsis thaliana] gi|15450693|gb|AAK96618.1|
At2g32080/F22D22.17 [Arabidopsis thaliana]
gi|17386138|gb|AAL38615.1|AF446882_1 At2g32080/F22D22.17
[Arabidopsis thaliana] gi|20197621|gb|AAD15396.2|
putative purine-rich single-stranded DNA-binding protein
[Arabidopsis thaliana]
Length = 296
Score = 174 bits (442), Expect = 8e-43
Identities = 85/102 (83%), Positives = 94/102 (91%)
Frame = -3
Query: 686 TSSELNVDRSVDLPAQDEIGNLGVSKVIRADQKRFFFDLGSHNRGHFLRISEVAGSDRSS 507
+SSE NVDR++D P Q+E G GVSKVIRADQKRFFFDLG++NRGHFLRISEVAGSDRSS
Sbjct: 195 SSSEHNVDRTIDSPGQEETGMTGVSKVIRADQKRFFFDLGNNNRGHFLRISEVAGSDRSS 254
Query: 506 IILPLSGLKQFHEIVGHFVEITKDRIEGMAVANVRTVDPPQR 381
IILPLSGLKQFHE++GHFVEITKD+IEGM ANVRTVDPPQR
Sbjct: 255 IILPLSGLKQFHEVIGHFVEITKDKIEGMTGANVRTVDPPQR 296
Score = 52.0 bits (123), Expect = 8e-06
Identities = 23/56 (41%), Positives = 38/56 (67%)
Frame = -3
Query: 617 VSKVIRADQKRFFFDLGSHNRGHFLRISEVAGSDRSSIILPLSGLKQFHEIVGHFV 450
VSK ++ + K F+FDL + RG +L+ISE + RS+II+P SG+ F ++ ++V
Sbjct: 32 VSKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYYV 87
Score = 44.3 bits (103), Expect = 0.002
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 13/68 (19%)
Frame = -3
Query: 614 SKVIRADQKRFFFDLGSHNRGHFLRISEVAGS-DRSSIILPLSG------------LKQF 474
SK ++ D K F+FD+G + RG FL++SE + S +RS+II+P L +
Sbjct: 96 SKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSPDEGWAAFRNILAEI 155
Query: 473 HEIVGHFV 450
HE G FV
Sbjct: 156 HEASGLFV 163
>dbj|BAB03442.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 308
Score = 158 bits (400), Expect = 6e-38
Identities = 77/99 (77%), Positives = 90/99 (90%)
Frame = -3
Query: 677 ELNVDRSVDLPAQDEIGNLGVSKVIRADQKRFFFDLGSHNRGHFLRISEVAGSDRSSIIL 498
E++V+R VDLP Q+EI +G+SKVIRADQKRFFFDLGS+NRGH+LRISEVAG+DRSSIIL
Sbjct: 210 EVDVERLVDLPPQEEISGMGMSKVIRADQKRFFFDLGSNNRGHYLRISEVAGADRSSIIL 269
Query: 497 PLSGLKQFHEIVGHFVEITKDRIEGMAVANVRTVDPPQR 381
PLSGLKQFHE+VGHFV+I KDR+EGM ANVRTV+ QR
Sbjct: 270 PLSGLKQFHEMVGHFVDIMKDRLEGMTGANVRTVESSQR 308
Score = 50.8 bits (120), Expect = 2e-05
Identities = 22/56 (39%), Positives = 39/56 (69%)
Frame = -3
Query: 617 VSKVIRADQKRFFFDLGSHNRGHFLRISEVAGSDRSSIILPLSGLKQFHEIVGHFV 450
VSK ++ + K F+FDL + RG +L+ISE S RS+II+P++G+ F ++ +++
Sbjct: 38 VSKTLQFEHKLFYFDLKENPRGRYLKISEKTSSTRSTIIVPVAGVAWFLDLFDYYI 93
Score = 44.3 bits (103), Expect = 0.002
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Frame = -3
Query: 614 SKVIRADQKRFFFDLGSHNRGHFLRISEVA-GSDRSSIILPL--SGLKQFHEIVGHFVEI 444
SK +R D K F+FD+G + RG FL++SE + +RS+II+P SG + + +EI
Sbjct: 102 SKELRLDTKVFYFDIGENKRGRFLKVSEASVNRNRSTIIVPAGSSGEEGWEAFRNVLLEI 161
Query: 443 TKDRIEGMAV---ANVRTVDPPQR 381
+ + N + ++PP+R
Sbjct: 162 NNEASRLYVLPNHPNQQHLEPPER 185
>pir||G84728 hypothetical protein At2g32080 [imported] - Arabidopsis thaliana
Length = 270
Score = 67.0 bits (162), Expect = 2e-10
Identities = 31/39 (79%), Positives = 35/39 (89%)
Frame = -3
Query: 542 RISEVAGSDRSSIILPLSGLKQFHEIVGHFVEITKDRIE 426
R + GSDRSSIILPLSGLKQFHE++GHFVEITKD+IE
Sbjct: 202 RTIDSPGSDRSSIILPLSGLKQFHEVIGHFVEITKDKIE 240
Score = 52.0 bits (123), Expect = 8e-06
Identities = 23/56 (41%), Positives = 38/56 (67%)
Frame = -3
Query: 617 VSKVIRADQKRFFFDLGSHNRGHFLRISEVAGSDRSSIILPLSGLKQFHEIVGHFV 450
VSK ++ + K F+FDL + RG +L+ISE + RS+II+P SG+ F ++ ++V
Sbjct: 32 VSKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYYV 87
Score = 44.3 bits (103), Expect = 0.002
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 13/68 (19%)
Frame = -3
Query: 614 SKVIRADQKRFFFDLGSHNRGHFLRISEVAGS-DRSSIILPLSG------------LKQF 474
SK ++ D K F+FD+G + RG FL++SE + S +RS+II+P L +
Sbjct: 96 SKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSPDEGWAAFRNILAEI 155
Query: 473 HEIVGHFV 450
HE G FV
Sbjct: 156 HEASGLFV 163
>ref|NP_524624.1| Purine-rich binding protein-alpha CG1507-PB
gi|22759349|gb|AAF59337.2| CG1507-PB [Drosophila
melanogaster]
Length = 275
Score = 50.1 bits (118), Expect = 3e-05
Identities = 24/64 (37%), Positives = 39/64 (60%)
Frame = -3
Query: 629 GNLGVSKVIRADQKRFFFDLGSHNRGHFLRISEVAGSDRSSIILPLSGLKQFHEIVGHFV 450
G+L + ++ D K F+FD+G +NRG ++RISEV + R+SI +P +F +I +
Sbjct: 192 GDLPEERHMKVDNKNFYFDIGQNNRGVYMRISEVKNNFRTSITIPEKCWIRFRDIFNDYC 251
Query: 449 EITK 438
E K
Sbjct: 252 EKMK 255
Score = 40.8 bits (94), Expect = 0.018
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = -3
Query: 614 SKVIRADQKRFFFDLGSHNRGHFLRISE--VAGSDRSSIILPLSGLKQFHEIVGHFVE 447
S+++ D +R++ DL + RG FLR+S+ G RS I LP G+ +F + + +E
Sbjct: 123 SEMMIKDYRRYYLDLKENARGRFLRVSQTITRGGPRSQIALPAQGMIEFRDALTDLLE 180
Score = 38.5 bits (88), Expect = 0.088
Identities = 18/55 (32%), Positives = 33/55 (59%), Gaps = 1/55 (1%)
Frame = -3
Query: 614 SKVIRADQKRFFFDLGSHNRGHFLRISEV-AGSDRSSIILPLSGLKQFHEIVGHF 453
+K+++ KRF+ D+ + RG F++++E+ A RS I L LS +F + + F
Sbjct: 46 TKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSF 100
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 590,576,819
Number of Sequences: 1393205
Number of extensions: 12893314
Number of successful extensions: 31220
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 29859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31177
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30835865868
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
