Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000644A_C01 KMC000644A_c01
(514 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA09330.1| gr1-protein [Arabidopsis thaliana] 70 2e-11
ref|NP_175086.1| gr1 protein; protein id: At1g44350.1, supported... 70 2e-11
gb|AAL47552.1| IAA-amino acid conjugate hydrolase-like protein [... 70 2e-11
gb|AAK97436.2|AF385367_1 IAA amidohydrolase [Arabidopsis suecica... 60 1e-08
gb|AAB60293.1| ILR1 60 1e-08
>emb|CAA09330.1| gr1-protein [Arabidopsis thaliana]
Length = 464
Score = 69.7 bits (169), Expect = 2e-11
Identities = 31/40 (77%), Positives = 34/40 (84%)
Frame = -3
Query: 512 GIRNETLGSTHTGHSPYFMIDEDALPTGAAVHATIAERYL 393
GIRNE LGS H HSP+FMIDED+LP GAAVHA +AERYL
Sbjct: 420 GIRNEELGSVHIAHSPHFMIDEDSLPVGAAVHAAVAERYL 459
>ref|NP_175086.1| gr1 protein; protein id: At1g44350.1, supported by cDNA:
gi_18252192, supported by cDNA: gi_18389265 [Arabidopsis
thaliana] gi|13876501|gb|AAK43477.1|AC084807_2 IAA-amino
acid hydrolase, putative [Arabidopsis thaliana]
gi|18252193|gb|AAL61929.1| IAA-amino acid hydrolase,
putative [Arabidopsis thaliana]
gi|18389266|gb|AAL67076.1| IAA-amino acid hydrolase
[Arabidopsis thaliana] gi|21436395|gb|AAM51367.1|
IAA-amino acid hydrolase [Arabidopsis thaliana]
Length = 464
Score = 69.7 bits (169), Expect = 2e-11
Identities = 31/40 (77%), Positives = 34/40 (84%)
Frame = -3
Query: 512 GIRNETLGSTHTGHSPYFMIDEDALPTGAAVHATIAERYL 393
GIRNE LGS H HSP+FMIDED+LP GAAVHA +AERYL
Sbjct: 420 GIRNEELGSVHIAHSPHFMIDEDSLPVGAAVHAAVAERYL 459
>gb|AAL47552.1| IAA-amino acid conjugate hydrolase-like protein [Arabidopsis
thaliana]
Length = 441
Score = 69.7 bits (169), Expect = 2e-11
Identities = 31/40 (77%), Positives = 34/40 (84%)
Frame = -3
Query: 512 GIRNETLGSTHTGHSPYFMIDEDALPTGAAVHATIAERYL 393
GIRNE LGS H HSP+FMIDED+LP GAAVHA +AERYL
Sbjct: 397 GIRNEELGSVHIAHSPHFMIDEDSLPVGAAVHAAVAERYL 436
>gb|AAK97436.2|AF385367_1 IAA amidohydrolase [Arabidopsis suecica]
gi|18652314|gb|AAL77061.1|AF468012_1 IAA-amino acid
hydrolase [Arabidopsis suecica]
Length = 442
Score = 60.1 bits (144), Expect = 1e-08
Identities = 27/43 (62%), Positives = 33/43 (75%)
Frame = -3
Query: 512 GIRNETLGSTHTGHSPYFMIDEDALPTGAAVHATIAERYLIEH 384
GI+NETLG+ HSPYF +DE+ALP GAA+HA +A YL EH
Sbjct: 388 GIKNETLGAGKPLHSPYFFVDEEALPVGAALHAAMAVSYLDEH 430
>gb|AAB60293.1| ILR1
Length = 442
Score = 60.1 bits (144), Expect = 1e-08
Identities = 27/43 (62%), Positives = 33/43 (75%)
Frame = -3
Query: 512 GIRNETLGSTHTGHSPYFMIDEDALPTGAAVHATIAERYLIEH 384
GI+NETLG+ HSPYF +DE+ALP GAA+HA +A YL EH
Sbjct: 388 GIKNETLGAGKPLHSPYFFVDEEALPVGAALHAAMAVSYLDEH 430
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 415,197,993
Number of Sequences: 1393205
Number of extensions: 8340471
Number of successful extensions: 17323
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 16879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17322
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
