Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000642A_C01 KMC000642A_c01
(523 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187492.2| hypothetical protein; protein id: At3g08800.1, ... 132 3e-30
gb|AAG51343.1|AC012562_4 hypothetical protein; 82071-85833 [Arab... 117 1e-25
gb|AAN64472.1| hypothetical protein [Oryza sativa (japonica cult... 92 4e-18
ref|NP_642438.1| O-methyltransferase [Xanthomonas axonopodis pv.... 35 0.69
gb|AAK69551.1|AF285275_1 paromomycin-resistance protein Prm1 [Kl... 34 0.90
>ref|NP_187492.2| hypothetical protein; protein id: At3g08800.1, supported by cDNA:
gi_17473696 [Arabidopsis thaliana]
gi|17473697|gb|AAL38305.1| unknown protein [Arabidopsis
thaliana]
Length = 936
Score = 132 bits (331), Expect = 3e-30
Identities = 67/153 (43%), Positives = 97/153 (62%)
Frame = -1
Query: 490 SCSPLELDKCLKLFSLXQFMFHGGIRHVKAELSIPHNDSEHHLTFVSGLPVGIQCEITLH 311
SC L+L K K FS QF F ++ V AE+ +P N ++FV GLPV I CEITL
Sbjct: 779 SCRLLDLIKIFKCFSPEQFTFSVNLQCVSAEVEVPGNGPYSPISFVPGLPVAIPCEITLL 838
Query: 310 NVLCDSRLWLRMSVDDGSTQYVFLDLDRFEGSREVRKLAFVVPFYRTPKANSLKLKVSIG 131
NV D+ LWLR+S +D + Q+V+LD + + G+ ++ F Y TP+A L+VSIG
Sbjct: 839 NVPRDTCLWLRISRNDETCQFVYLDPNLYNGNGREKRFMFTAVTYMTPRAVVFTLRVSIG 898
Query: 130 LECMFENVCPVQRFGGPKHELVLLCKEKPVYLS 32
+EC+FE++C ++ GPKH + LCKE+ ++LS
Sbjct: 899 IECLFEDICYRKQRHGPKHPVAYLCKEREIHLS 931
>gb|AAG51343.1|AC012562_4 hypothetical protein; 82071-85833 [Arabidopsis thaliana]
Length = 768
Score = 117 bits (292), Expect = 1e-25
Identities = 62/159 (38%), Positives = 97/159 (60%)
Frame = -1
Query: 508 TSTYEASCSPLELDKCLKLFSLXQFMFHGGIRHVKAELSIPHNDSEHHLTFVSGLPVGIQ 329
T T ++S S LD + + + + ++ V AE+ +P N ++FV GLPV I
Sbjct: 609 TLTADSSISKGTLDFICQYVHVIELL----VQCVSAEVEVPGNGPYSPISFVPGLPVAIP 664
Query: 328 CEITLHNVLCDSRLWLRMSVDDGSTQYVFLDLDRFEGSREVRKLAFVVPFYRTPKANSLK 149
CEITL NV D+ LWLR+S +D + Q+V+LD + + G+ ++ F Y TP+A
Sbjct: 665 CEITLLNVPRDTCLWLRISRNDETCQFVYLDPNLYNGNGREKRFMFTAVTYMTPRAVVFT 724
Query: 148 LKVSIGLECMFENVCPVQRFGGPKHELVLLCKEKPVYLS 32
L+VSIG+EC+FE++C ++ GPKH + LCKE+ ++LS
Sbjct: 725 LRVSIGIECLFEDICYRKQRHGPKHPVAYLCKEREIHLS 763
>gb|AAN64472.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 795
Score = 92.0 bits (227), Expect = 4e-18
Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 1/160 (0%)
Frame = -1
Query: 514 ECTSTYEASCSPLELDKCLKLFSLXQFMFHGGIRHVKAELSIPHNDSEHHLTFVSGLPVG 335
E ++A+ ++ L+LF +G ++ + A+L + ND E+ T+V GLPV
Sbjct: 630 EIKKAFDANFVGHDIFTLLELFHPKPTTDYGMLKTISADLQVRDNDPENSSTYVCGLPVA 689
Query: 334 IQCEITLHNVLCDSRLWLRMSVDDGSTQYVFLDLDRFEGSREVRKLAFVVPFYRTPKANS 155
+ I+L N+ RLWLRM V + S Q+ FL+L F G+ EV+ + ++PFY TP A S
Sbjct: 690 VSLYISLCNISSQDRLWLRMIVGE-SIQHTFLELSSFGGNDEVKSCSTIIPFYATPMACS 748
Query: 154 LKLKVSIGLECMFENVCPVQRFG-GPKHELVLLCKEKPVY 38
L+ + +EC + +V Q GP ++ L E VY
Sbjct: 749 FVLRTCLVMECPYGSVSIRQECNRGPSGSIIELSDELDVY 788
>ref|NP_642438.1| O-methyltransferase [Xanthomonas axonopodis pv. citri str. 306]
gi|21108346|gb|AAM36974.1| O-methyltransferase
[Xanthomonas axonopodis pv. citri str. 306]
Length = 212
Score = 34.7 bits (78), Expect = 0.69
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = -1
Query: 397 LSIPHNDSEHHLTFVSGLPVGIQCEITLHNVLCDSRLWLRMSVDDGSTQYVFLDLDR 227
+++ H + + L + + G++ IT VL D+ WL +VDDGS +FLD DR
Sbjct: 94 ITLEHAEDKAALAAANFVRAGLRAHIT--QVLGDAGAWLE-TVDDGSVDLLFLDADR 147
>gb|AAK69551.1|AF285275_1 paromomycin-resistance protein Prm1 [Kluyveromyces lactis]
Length = 778
Score = 34.3 bits (77), Expect = 0.90
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 9/50 (18%)
Frame = +1
Query: 220 LQNGPNQERHIVLNHHPHS---------SSATTYYHIKHYGELSHIVYQL 342
LQ G Q++HI N PHS SS T+YH Y + SH++ L
Sbjct: 533 LQQGQQQQQHIDHNQIPHSHDHAHSPPLSSHETFYHNTEYEDSSHLISAL 582
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,948,301
Number of Sequences: 1393205
Number of extensions: 9272946
Number of successful extensions: 21287
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 20765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21275
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
