Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000641A_C01 KMC000641A_c01
(655 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189306.1| glycosyl hydrolase family 38 (alpha-mannosidase... 174 1e-42
ref|NP_196902.2| glycosyl hydrolase family 38 (alpha-mannosidase... 164 1e-39
dbj|BAB11126.1| alpha-mannosidase [Arabidopsis thaliana] 164 1e-39
ref|NP_201416.1| glycosyl hydrolase family 38 (alpha-mannosidase... 139 3e-32
gb|AAL73069.1|AC090873_15 Putative alpha-mannosidase [Oryza sati... 130 2e-29
>ref|NP_189306.1| glycosyl hydrolase family 38 (alpha-mannosidase); protein id:
At3g26720.1, supported by cDNA: gi_14517402 [Arabidopsis
thaliana] gi|1888357|emb|CAA66821.1| alpha-mannosidase
[Arabidopsis thaliana] gi|1890154|emb|CAA72432.1|
alpha-mannosidase precursor [Arabidopsis thaliana]
gi|11994305|dbj|BAB01735.1| alpha-mannosidase
[Arabidopsis thaliana] gi|14517403|gb|AAK62592.1|
AT3g26720/MLJ15_12 [Arabidopsis thaliana]
gi|21360397|gb|AAM47314.1| AT3g26720/MLJ15_12
[Arabidopsis thaliana]
Length = 1019
Score = 174 bits (440), Expect = 1e-42
Identities = 87/144 (60%), Positives = 114/144 (78%), Gaps = 1/144 (0%)
Frame = -2
Query: 654 SPFLLAFTESDGN-WGDSHVTTFSGLDPSYSLPDNVAIITLEDLGDGKVLLRLAHLYEIG 478
SP L+AFTE +G+ W +SH TTFS +PSYSLP NVA++TL++L +G+VLLRLAHL+E+G
Sbjct: 861 SPLLIAFTEQEGDSWINSHKTTFSAFEPSYSLPKNVALLTLQELENGEVLLRLAHLFEVG 920
Query: 477 EDKHLSVKASVELKKVFPYKQIQKITEASLSANQERAEMERKRLVWQVKGSTPEPQVSRG 298
ED SV A VELKK+F K+I+++ E SLS NQE+AEME++RL+W+V+GS E +V RG
Sbjct: 921 EDSEYSVMAKVELKKLFHNKKIREVKETSLSGNQEKAEMEKRRLIWKVEGSAGE-EVKRG 979
Query: 297 GPVDPDKLVAELAPMEIRTFIISF 226
VD +KLV EL PMEIRT +I F
Sbjct: 980 EAVDAEKLVVELVPMEIRTLLIKF 1003
>ref|NP_196902.2| glycosyl hydrolase family 38 (alpha-mannosidase); protein id:
At5g13980.1, supported by cDNA: gi_20466475 [Arabidopsis
thaliana] gi|20466476|gb|AAM20555.1| alpha-mannosidase
[Arabidopsis thaliana] gi|23198186|gb|AAN15620.1|
alpha-mannosidase [Arabidopsis thaliana]
Length = 1024
Score = 164 bits (414), Expect = 1e-39
Identities = 89/145 (61%), Positives = 107/145 (73%), Gaps = 4/145 (2%)
Frame = -2
Query: 654 SPFLLAFTESD-GNWGDSHVTTFSGLDPSYSLPDNVAIITLEDLGDGKVLLRLAHLYEIG 478
SP LLAF + D G +FSG+DPSYSLPDNVA++TL++L DG VLLRLAHLYE+
Sbjct: 864 SPLLLAFAQQDDGKPMSFGAASFSGIDPSYSLPDNVALLTLQELDDGNVLLRLAHLYEVE 923
Query: 477 EDKHLSVKASVELKKVFPYKQIQKITEASLSANQERAEMERKRLVWQVKGS---TPEPQV 307
EDK LS ASVELKK+FP K+I K+TE SLSANQER+ ME+KRLVW+V+G E +
Sbjct: 924 EDKELSGVASVELKKLFPGKKIGKLTEMSLSANQERSTMEKKRLVWKVEGEGSYGEEKKA 983
Query: 306 SRGGPVDPDKLVAELAPMEIRTFII 232
RG +DP KL EL PMEIRT +I
Sbjct: 984 KRGREIDPRKLEMELYPMEIRTVLI 1008
>dbj|BAB11126.1| alpha-mannosidase [Arabidopsis thaliana]
Length = 1030
Score = 164 bits (414), Expect = 1e-39
Identities = 89/145 (61%), Positives = 107/145 (73%), Gaps = 4/145 (2%)
Frame = -2
Query: 654 SPFLLAFTESD-GNWGDSHVTTFSGLDPSYSLPDNVAIITLEDLGDGKVLLRLAHLYEIG 478
SP LLAF + D G +FSG+DPSYSLPDNVA++TL++L DG VLLRLAHLYE+
Sbjct: 870 SPLLLAFAQQDDGKPMSFGAASFSGIDPSYSLPDNVALLTLQELDDGNVLLRLAHLYEVE 929
Query: 477 EDKHLSVKASVELKKVFPYKQIQKITEASLSANQERAEMERKRLVWQVKGS---TPEPQV 307
EDK LS ASVELKK+FP K+I K+TE SLSANQER+ ME+KRLVW+V+G E +
Sbjct: 930 EDKELSGVASVELKKLFPGKKIGKLTEMSLSANQERSTMEKKRLVWKVEGEGSYGEEKKA 989
Query: 306 SRGGPVDPDKLVAELAPMEIRTFII 232
RG +DP KL EL PMEIRT +I
Sbjct: 990 KRGREIDPRKLEMELYPMEIRTVLI 1014
>ref|NP_201416.1| glycosyl hydrolase family 38 (alpha-mannosidase); protein id:
At5g66150.1 [Arabidopsis thaliana]
gi|10177130|dbj|BAB10420.1| alpha-mannosidase
[Arabidopsis thaliana]
Length = 1047
Score = 139 bits (350), Expect = 3e-32
Identities = 76/145 (52%), Positives = 97/145 (66%), Gaps = 2/145 (1%)
Frame = -2
Query: 654 SPFLLAFT-ESDGNWGDSHVTTFSGLDPSYSLPDNVAIITLEDLGDGKVLLRLAHLYEIG 478
SP L+AF E+ W S+ +D Y+LP N+A+ITLE+L G VLLRLAHLYE G
Sbjct: 892 SPLLMAFAHENKEKWKASNTVKGYAMDHLYTLPQNIALITLEELDLGNVLLRLAHLYEAG 951
Query: 477 EDKHLSVKASVELKKVFPYKQIQKITEASLSANQERAEMERKRLVWQVKGSTPEPQVS-R 301
ED S A VELKK+F K I+++TE SLSANQE+ +M+ K + W+V+G +P R
Sbjct: 952 EDSDYSKIAKVELKKLFSGKMIKEVTEMSLSANQEKVKMKEK-MKWKVEGEAEQPSSPLR 1010
Query: 300 GGPVDPDKLVAELAPMEIRTFIISF 226
GGPVD LV EL PMEIRTF++ F
Sbjct: 1011 GGPVDKSTLVVELGPMEIRTFVVQF 1035
>gb|AAL73069.1|AC090873_15 Putative alpha-mannosidase [Oryza sativa]
gi|19919971|gb|AAM08419.1|AC112513_5 Putative
alpha-mannosidase [Oryza sativa]
Length = 438
Score = 130 bits (327), Expect = 2e-29
Identities = 69/132 (52%), Positives = 93/132 (70%), Gaps = 1/132 (0%)
Frame = -2
Query: 618 NWGDSHVTTFSGLDPSYSLPDNVAIITLEDLGDGKVLLRLAHLYEIGEDKHLSVKASVEL 439
+W +++ S ++ +YSLPDNVAIITL+ L DG LLRLAHL++ ED SV A VEL
Sbjct: 309 SWKSNNIAKASTVEGNYSLPDNVAIITLQSLDDGTTLLRLAHLFQAQEDTQYSVMAKVEL 368
Query: 438 KKVFPYKQIQKITEASLSANQERAEMERKRLVWQVKG-STPEPQVSRGGPVDPDKLVAEL 262
+K+F + I+ +TE SLSANQ+++EM K+L W+V G S +P +GGPVD LV EL
Sbjct: 369 RKLFGKRIIKDLTETSLSANQKKSEM--KKLNWRVTGESKTDPAPLKGGPVDSHALVVEL 426
Query: 261 APMEIRTFIISF 226
PMEIRTF++ F
Sbjct: 427 GPMEIRTFLLKF 438
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 528,558,017
Number of Sequences: 1393205
Number of extensions: 11219949
Number of successful extensions: 25637
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 24751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25609
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
