Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000622A_C01 KMC000622A_c01
(580 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567450.1| expressed protein; protein id: At4g14950.1 [Ara... 77 2e-13
gb|AAL24087.1| unknown protein [Arabidopsis thaliana] 76 3e-13
pir||E86188 hypothetical protein [imported] - Arabidopsis thalia... 74 1e-12
ref|NP_563735.1| expressed protein; protein id: At1g05360.1, sup... 74 1e-12
gb|AAM60984.1| unknown [Arabidopsis thaliana] 74 1e-12
>ref|NP_567450.1| expressed protein; protein id: At4g14950.1 [Arabidopsis thaliana]
Length = 416
Score = 77.0 bits (188), Expect = 2e-13
Identities = 33/47 (70%), Positives = 41/47 (87%)
Frame = -3
Query: 500 KKWDFSIASVWNTVVWLMLMNFFVKIVNSTAQSYVKKQQEKELAAST 360
KKWDFS AS+WN +VWLML+NFFVKIV +TAQ ++KK+QEKE+A T
Sbjct: 367 KKWDFSFASIWNGIVWLMLLNFFVKIVTATAQRHLKKKQEKEMATLT 413
>gb|AAL24087.1| unknown protein [Arabidopsis thaliana]
Length = 416
Score = 76.3 bits (186), Expect = 3e-13
Identities = 33/47 (70%), Positives = 41/47 (87%)
Frame = -3
Query: 500 KKWDFSIASVWNTVVWLMLMNFFVKIVNSTAQSYVKKQQEKELAAST 360
KKWDFS AS+WN +VWLML+NFFVKIV +TAQ ++KK+QEKE+A T
Sbjct: 367 KKWDFSFASIWNGMVWLMLLNFFVKIVTATAQRHLKKKQEKEMATLT 413
>pir||E86188 hypothetical protein [imported] - Arabidopsis thaliana
gi|2388561|gb|AAB71442.1| Similar to Arabidopsis
hypothetical protein PID:e326839 (gb|Z97337).
[Arabidopsis thaliana]
Length = 430
Score = 74.3 bits (181), Expect = 1e-12
Identities = 35/47 (74%), Positives = 39/47 (82%)
Frame = -3
Query: 500 KKWDFSIASVWNTVVWLMLMNFFVKIVNSTAQSYVKKQQEKELAAST 360
KKWD S ASVWN VVWLML+NFF +IV STAQ Y+KKQQE+EL A T
Sbjct: 373 KKWDLSFASVWNGVVWLMLLNFFGQIVTSTAQRYLKKQQEEELDALT 419
>ref|NP_563735.1| expressed protein; protein id: At1g05360.1, supported by cDNA:
107636. [Arabidopsis thaliana]
Length = 416
Score = 74.3 bits (181), Expect = 1e-12
Identities = 35/47 (74%), Positives = 39/47 (82%)
Frame = -3
Query: 500 KKWDFSIASVWNTVVWLMLMNFFVKIVNSTAQSYVKKQQEKELAAST 360
KKWD S ASVWN VVWLML+NFF +IV STAQ Y+KKQQE+EL A T
Sbjct: 359 KKWDLSFASVWNGVVWLMLLNFFGQIVTSTAQRYLKKQQEEELDALT 405
>gb|AAM60984.1| unknown [Arabidopsis thaliana]
Length = 416
Score = 74.3 bits (181), Expect = 1e-12
Identities = 35/47 (74%), Positives = 39/47 (82%)
Frame = -3
Query: 500 KKWDFSIASVWNTVVWLMLMNFFVKIVNSTAQSYVKKQQEKELAAST 360
KKWD S ASVWN VVWLML+NFF +IV STAQ Y+KKQQE+EL A T
Sbjct: 359 KKWDLSFASVWNGVVWLMLLNFFGQIVTSTAQRYLKKQQEEELDALT 405
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 435,435,347
Number of Sequences: 1393205
Number of extensions: 8335623
Number of successful extensions: 21018
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 20279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20989
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
