Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000619A_C01 KMC000619A_c01
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201523.1| putative protein; protein id: At5g67220.1, supp... 54 2e-06
ref|NP_594603.1| hypothetical protein [Schizosaccharomyces pombe... 32 4.3
gb|AAN87454.1| NADH dehydrogenase [Heliobacillus mobilis] 32 5.6
ref|NP_233115.1| hypothetical protein [Vibrio cholerae] gi|11355... 32 7.3
>ref|NP_201523.1| putative protein; protein id: At5g67220.1, supported by cDNA:
gi_15146315, supported by cDNA: gi_20908081 [Arabidopsis
thaliana] gi|10177609|dbj|BAB10956.1|
gb|AAF51525.1~gene_id:K21H1.18~similar to unknown
protein [Arabidopsis thaliana]
gi|15146316|gb|AAK83641.1| AT5g67220/K21H1_18
[Arabidopsis thaliana] gi|20908082|gb|AAM26724.1|
AT5g67220/K21H1_18 [Arabidopsis thaliana]
Length = 423
Score = 53.5 bits (127), Expect = 2e-06
Identities = 22/35 (62%), Positives = 29/35 (82%)
Frame = -3
Query: 568 MLGDWFSLQPHIREELNQQSKLTFEFLYDMVDRLR 464
MLG+WF + P +RE+LN Q+ LTFEFLY +VD+LR
Sbjct: 363 MLGEWFRIHPQVREQLNAQNILTFEFLYGLVDQLR 397
>ref|NP_594603.1| hypothetical protein [Schizosaccharomyces pombe]
gi|1723561|sp|Q10474|YDF2_SCHPO Hypothetical protein
C17C9.02c in chromosome I gi|7492140|pir||T11582
lipopeptide antibiotic iturin A biosynthesis protein
homolog - fission yeast (Schizosaccharomyces pombe)
gi|1314154|emb|CAA97348.1| hypothetical protein
[Schizosaccharomyces pombe]
Length = 258
Score = 32.3 bits (72), Expect = 4.3
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Frame = -2
Query: 239 ELLKLLISRVVFYFILMAIAYWQCCTSVLRRRCLHLADKFVSINLTFHSLDQLM------ 78
+L+K IS + +F+L W C ++L+ + L+ + I +TFH L++L+
Sbjct: 153 KLIKSSISSIDVFFLL-----WTCKEAILKALGIGLSGNPLDIVVTFHKLNELLNSEEVS 207
Query: 77 LKTASTI*INTFLFDLD 27
L+ A+T + + +DL+
Sbjct: 208 LRRAATAVYSGYSWDLE 224
>gb|AAN87454.1| NADH dehydrogenase [Heliobacillus mobilis]
Length = 432
Score = 32.0 bits (71), Expect = 5.6
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Frame = -1
Query: 510 LN*HSSFFMTWWIGLGATGT----RIPLYLKD----DRVETLK*TVTQVYTAEHQ 370
+N H+ ++T W+ A GT RI + +KD DRV +K TV +V EH+
Sbjct: 51 VNKHNYHYLTTWLHEVAAGTGDDDRITIQIKDVIDTDRVHLIKDTVLEVQKEEHR 105
>ref|NP_233115.1| hypothetical protein [Vibrio cholerae] gi|11355503|pir||C82423
hypothetical protein VCA0728 [imported] - Vibrio
cholerae (strain N16961 serogroup O1)
gi|9658149|gb|AAF96627.1| hypothetical protein [Vibrio
cholerae]
Length = 723
Score = 31.6 bits (70), Expect = 7.3
Identities = 23/58 (39%), Positives = 29/58 (49%), Gaps = 1/58 (1%)
Frame = +2
Query: 53 FRSLKQSLTLTGPGYEMLN*W-TQIYQLSASIGVLTHLYNTANRQLP*E*SKIQHERL 223
FR L TLT + N W +QI LS+SIG ++L QLP + S I H L
Sbjct: 188 FRQLLVDSTLTLKNGNLQNKWDSQIRNLSSSIGNFSNLAEPIGSQLPDQLSHIGHSLL 245
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,873,942
Number of Sequences: 1393205
Number of extensions: 8966088
Number of successful extensions: 15155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15153
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
