Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000616A_C02 KMC000616A_c02
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q39471|IDI2_CLABR Isopentenyl-diphosphate delta-isomerase II ... 32 4.4
gb|AAB67743.1| isopentenyl pyrophosphate isomerase [Clarkia brew... 32 4.4
sp|Q9QB84|ETF2_YABAM Early transcription factor 82 kDa subunit (... 32 7.5
gb|AAC98159.1| NADH dehydrogenase subunit 4 [Haemonchus contortus] 32 7.5
ref|NP_149299.1| AstB/chuR/nirj-related protein [Clostridium ace... 32 7.5
>sp|Q39471|IDI2_CLABR Isopentenyl-diphosphate delta-isomerase II (IPP isomerase II)
(Isopentenyl pyrophosphate isomerase II)
Length = 286
Score = 32.3 bits (72), Expect = 4.4
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
Frame = -3
Query: 528 LFNLREVALLQNPHQVRESL-----QLKVLLKRCNQGLEGLK 418
LF +R+VA+ NP +V E QLK LLK+ + G EGLK
Sbjct: 208 LFIVRDVAVHPNPDEVAEIKYVNREQLKELLKKADAGEEGLK 249
>gb|AAB67743.1| isopentenyl pyrophosphate isomerase [Clarkia breweri]
Length = 303
Score = 32.3 bits (72), Expect = 4.4
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
Frame = -3
Query: 528 LFNLREVALLQNPHQVRESL-----QLKVLLKRCNQGLEGLK 418
LF +R+VA+ NP +V E QLK LLK+ + G EGLK
Sbjct: 225 LFIVRDVAVHPNPDEVAEIKYVNREQLKELLKKADAGEEGLK 266
>sp|Q9QB84|ETF2_YABAM Early transcription factor 82 kDa subunit (VETF large subunit)
gi|6681636|dbj|BAA88811.1| Yb-B14L [Yaba monkey tumor
virus]
Length = 713
Score = 31.6 bits (70), Expect = 7.5
Identities = 18/43 (41%), Positives = 24/43 (54%), Gaps = 5/43 (11%)
Frame = +1
Query: 1 NDKKTIQIIDHLIYYDNNY-----NIIITILDILRITYPVQKK 114
NDK TI I D +IY+ NY NI I + +I+ V+KK
Sbjct: 542 NDKNTILIADDIIYFPMNYFSIGNNIYILVQEIVHEVVLVKKK 584
>gb|AAC98159.1| NADH dehydrogenase subunit 4 [Haemonchus contortus]
Length = 153
Score = 31.6 bits (70), Expect = 7.5
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -3
Query: 117 FLFLYRICNSKYIKYSNNNIVIVVIINEMIYNLY 16
FL + + YI Y+NNN I++ + M+YN++
Sbjct: 114 FLIVNSLAGKVYINYNNNNFGIMMFLMVMMYNIF 147
>ref|NP_149299.1| AstB/chuR/nirj-related protein [Clostridium acetobutylicum]
gi|14994451|gb|AAK76881.1|AE001438_134
AstB/chuR/nirj-related protein [Clostridium
acetobutylicum]
Length = 390
Score = 31.6 bits (70), Expect = 7.5
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 4 DKKTIQIIDHLIYYDNNYNIIITILDILRITYPVQKKKELHFLI 135
D + I I + + +DNN + +I I D L + P++ +E H LI
Sbjct: 123 DPREIAICTNTLMFDNNLDSLIKISDNLELLIPIEGFEEAHDLI 166
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 461,428,994
Number of Sequences: 1393205
Number of extensions: 9589095
Number of successful extensions: 27906
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 26845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27884
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
