Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000613A_C01 KMC000613A_c01
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA84067.1| myosin heavy chain [Arabidopsis thaliana] 61 8e-09
ref|NP_191375.1| myosin heavy chain MYA3; protein id: At3g58160.... 61 8e-09
pir||S47105 myosin heavy chain MYA3 - Arabidopsis thaliana (frag... 61 8e-09
ref|NP_777128.1| tenascin X [Bos taurus] gi|11277079|pir||T42629... 33 1.9
ref|NP_187190.1| hypothetical protein; protein id: At3g05390.1 [... 33 2.5
>emb|CAA84067.1| myosin heavy chain [Arabidopsis thaliana]
Length = 963
Score = 61.2 bits (147), Expect = 8e-09
Identities = 27/60 (45%), Positives = 43/60 (71%), Gaps = 3/60 (5%)
Frame = -2
Query: 565 SDSSSTDSDFTFPAPVSNPEAFSSPKPKSFELVVQDITAADGSGSE---SEKEGSFDDFF 395
S++SS+DSDFTFPAP + + FS+ P +++VQD++ + G+E S+KEG F+D+F
Sbjct: 904 SEASSSDSDFTFPAPSPSSDNFSTFNPNQLQVIVQDLSTTEAKGTESYDSDKEGGFEDYF 963
>ref|NP_191375.1| myosin heavy chain MYA3; protein id: At3g58160.1 [Arabidopsis
thaliana] gi|11276963|pir||T45976 myosin heavy chain MYA3
- Arabidopsis thaliana gi|6735328|emb|CAB68154.1| myosin
heavy chain MYA3 [Arabidopsis thaliana]
Length = 1242
Score = 61.2 bits (147), Expect = 8e-09
Identities = 27/60 (45%), Positives = 43/60 (71%), Gaps = 3/60 (5%)
Frame = -2
Query: 565 SDSSSTDSDFTFPAPVSNPEAFSSPKPKSFELVVQDITAADGSGSE---SEKEGSFDDFF 395
S++SS+DSDFTFPAP + + FS+ P +++VQD++ + G+E S+KEG F+D+F
Sbjct: 1183 SEASSSDSDFTFPAPSPSSDNFSTFNPNQLQVIVQDLSTTEAKGTESYDSDKEGGFEDYF 1242
>pir||S47105 myosin heavy chain MYA3 - Arabidopsis thaliana (fragment)
Length = 998
Score = 61.2 bits (147), Expect = 8e-09
Identities = 27/60 (45%), Positives = 43/60 (71%), Gaps = 3/60 (5%)
Frame = -2
Query: 565 SDSSSTDSDFTFPAPVSNPEAFSSPKPKSFELVVQDITAADGSGSE---SEKEGSFDDFF 395
S++SS+DSDFTFPAP + + FS+ P +++VQD++ + G+E S+KEG F+D+F
Sbjct: 939 SEASSSDSDFTFPAPSPSSDNFSTFNPNQLQVIVQDLSTTEAKGTESYDSDKEGGFEDYF 998
>ref|NP_777128.1| tenascin X [Bos taurus] gi|11277079|pir||T42629 tenascin-X - bovine
gi|2462979|emb|CAA72671.1| Tenascin-X [Bos taurus]
Length = 4135
Score = 33.5 bits (75), Expect = 1.9
Identities = 24/55 (43%), Positives = 27/55 (48%), Gaps = 2/55 (3%)
Frame = -2
Query: 556 SSTDSDFTFPAPVSNPEAFSSP--KPKSFELVVQDITAADGSGSESEKEGSFDDF 398
S D + T PAP P A P KP+ ELVV D T S S + EG FD F
Sbjct: 2556 SEKDQEMT-PAPTDLPTAAPEPPIKPRLGELVVTDATPDSLSLSWTVPEGQFDHF 2609
>ref|NP_187190.1| hypothetical protein; protein id: At3g05390.1 [Arabidopsis
thaliana] gi|7596772|gb|AAF64543.1| hypothetical protein
[Arabidopsis thaliana]
Length = 463
Score = 33.1 bits (74), Expect = 2.5
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +3
Query: 138 NGCEQDEPLINKFIIDELFCYLYLTDLQDPEINCVSTNLY*GGYATEGATC 290
N E++EPLINKF+I+E+ Y+ + + +IN T Y T G C
Sbjct: 137 NSTEKEEPLINKFLIEEIRQYITPKENRVGKINMFGTERV---YNTIGHAC 184
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,104,487
Number of Sequences: 1393205
Number of extensions: 9593929
Number of successful extensions: 36741
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 35290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36713
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
