Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000608A_C01 KMC000608A_c01
(594 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL36401.1| putative arm repeat-containing protein [Arabidops... 72 4e-12
ref|NP_174228.1| arm repeat-containing protein, putative; protei... 72 4e-12
pir||T08872 hypothetical protein ARC1 - rape gi|2558938|gb|AAB97... 45 3e-07
emb|CAD20348.1| ARC1 protein [Brassica oleracea] 44 2e-06
dbj|BAB93187.1| putative arm repeat containing protein [Oryza sa... 35 0.001
>gb|AAL36401.1| putative arm repeat-containing protein [Arabidopsis thaliana]
Length = 729
Score = 72.4 bits (176), Expect = 4e-12
Identities = 40/68 (58%), Positives = 48/68 (69%)
Frame = -2
Query: 497 VQTLLFSGTKRARRKAASLARVFQRCENASLHYGGLGVGYALASNSAPTRDTSYAGDVSV 318
+QTLLF+GTKRARRKAASLARVFQR ENA++ G Y N+ RD + DVSV
Sbjct: 663 LQTLLFTGTKRARRKAASLARVFQRRENAAMRSG----VYGFVGNTNGNRDGGFTTDVSV 718
Query: 317 PMSISVPV 294
P+SIS+ V
Sbjct: 719 PISISISV 726
Score = 57.0 bits (136), Expect = 2e-07
Identities = 28/42 (66%), Positives = 32/42 (75%)
Frame = -1
Query: 594 KENAVAALLELCRGGGAAATERVVKAPALAGLRSNLAFLRDK 469
KENAVAALLELCR GGAA E+V++APA+AGL L F K
Sbjct: 631 KENAVAALLELCRSGGAAVAEKVLRAPAIAGLLQTLLFTGTK 672
>ref|NP_174228.1| arm repeat-containing protein, putative; protein id: At1g29340.1,
supported by cDNA: gi_17381177 [Arabidopsis thaliana]
gi|25354710|pir||A86416 probable arm repeat-containing
protein - Arabidopsis thaliana
gi|12323514|gb|AAG51726.1|AC068667_5 arm
repeat-containing protein, putative; 6839-9028
[Arabidopsis thaliana] gi|23297797|gb|AAN13028.1|
putative arm repeat-containing protein [Arabidopsis
thaliana]
Length = 729
Score = 72.4 bits (176), Expect = 4e-12
Identities = 40/68 (58%), Positives = 48/68 (69%)
Frame = -2
Query: 497 VQTLLFSGTKRARRKAASLARVFQRCENASLHYGGLGVGYALASNSAPTRDTSYAGDVSV 318
+QTLLF+GTKRARRKAASLARVFQR ENA++ G Y N+ RD + DVSV
Sbjct: 663 LQTLLFTGTKRARRKAASLARVFQRRENAAMRSG----VYGFVGNTNGNRDGGFTTDVSV 718
Query: 317 PMSISVPV 294
P+SIS+ V
Sbjct: 719 PISISISV 726
Score = 57.0 bits (136), Expect = 2e-07
Identities = 28/42 (66%), Positives = 32/42 (75%)
Frame = -1
Query: 594 KENAVAALLELCRGGGAAATERVVKAPALAGLRSNLAFLRDK 469
KENAVAALLELCR GGAA E+V++APA+AGL L F K
Sbjct: 631 KENAVAALLELCRSGGAAVAEKVLRAPAIAGLLQTLLFTGTK 672
>pir||T08872 hypothetical protein ARC1 - rape gi|2558938|gb|AAB97738.1| arm
repeat containing protein [Brassica napus]
Length = 661
Score = 45.4 bits (106), Expect(2) = 3e-07
Identities = 22/36 (61%), Positives = 25/36 (69%)
Frame = -1
Query: 594 KENAVAALLELCRGGGAAATERVVKAPALAGLRSNL 487
KE A+A LL+LC GGA TE+VVK PALA L L
Sbjct: 598 KEKAIATLLQLCTAGGAVVTEKVVKTPALAVLTRKL 633
Score = 30.4 bits (67), Expect(2) = 3e-07
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -2
Query: 488 LLFSGTKRARRKAASLARVFQRCE 417
LL +GT RA+RKA SL++V + C+
Sbjct: 633 LLLTGTDRAKRKAVSLSKVCKGCD 656
>emb|CAD20348.1| ARC1 protein [Brassica oleracea]
Length = 285
Score = 43.9 bits (102), Expect(2) = 2e-06
Identities = 22/36 (61%), Positives = 25/36 (69%)
Frame = -1
Query: 594 KENAVAALLELCRGGGAAATERVVKAPALAGLRSNL 487
KE A+A LL+LC GGA TE+VVK PALA L L
Sbjct: 228 KEKAIATLLQLCTLGGAVVTEKVVKTPALAVLTRKL 263
Score = 29.6 bits (65), Expect(2) = 2e-06
Identities = 13/23 (56%), Positives = 18/23 (77%)
Frame = -2
Query: 488 LLFSGTKRARRKAASLARVFQRC 420
LL +GT RA+RKA SL++V + C
Sbjct: 263 LLLTGTDRAKRKAVSLSKVCKGC 285
>dbj|BAB93187.1| putative arm repeat containing protein [Oryza sativa (japonica
cultivar-group)] gi|29367589|gb|AAO72656.1| arm repeat
protein [Oryza sativa (japonica cultivar-group)]
Length = 680
Score = 34.7 bits (78), Expect(2) = 0.001
Identities = 21/45 (46%), Positives = 27/45 (59%)
Frame = -2
Query: 488 LLFSGTKRARRKAASLARVFQRCENASLHYGGLGVGYALASNSAP 354
L+ GT+RARRKAASL R+ +R AS G G G +A+ P
Sbjct: 631 LMSIGTERARRKAASLGRICRRWAAASAADGERGGGCPVATVVPP 675
Score = 29.3 bits (64), Expect(2) = 0.001
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -1
Query: 594 KENAVAALLELCRGGGAAATERVVKAPAL 508
+ENA AAL+ LCR GA A +V+ P +
Sbjct: 596 RENATAALVLLCRRLGAPAVTQVMAVPGV 624
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 481,763,401
Number of Sequences: 1393205
Number of extensions: 9568104
Number of successful extensions: 24225
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 23421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24188
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
