Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000606A_C01 KMC000606A_c01
(534 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201396.2| unknown protein; protein id: At5g65950.1, suppo... 120 1e-26
gb|AAM20523.1| unknown protein [Arabidopsis thaliana] gi|2319811... 120 1e-26
gb|AAH22185.1|AAH22185 hypothetical protein FLJ12716 [Homo sapiens] 47 1e-04
dbj|BAB14556.1| unnamed protein product [Homo sapiens] 47 1e-04
dbj|BAB14240.1| unnamed protein product [Homo sapiens] 47 1e-04
>ref|NP_201396.2| unknown protein; protein id: At5g65950.1, supported by cDNA:
gi_20466411 [Arabidopsis thaliana]
Length = 865
Score = 120 bits (300), Expect = 1e-26
Identities = 59/94 (62%), Positives = 72/94 (75%)
Frame = -2
Query: 533 YYIRILNQTPLLQEVKYSLGDSQSFVLCGYHNDTVYVLPKSEQILSYKLVPLASGMQQLP 354
Y +RI NQT LLQE K+ L D+QSFVL G H++TV VLPKSE +LSYKLVPL G QQLP
Sbjct: 767 YAVRICNQTQLLQEAKFGLADAQSFVLSGSHSNTVSVLPKSEHVLSYKLVPLTCGEQQLP 826
Query: 353 KFSMTSVRYSAAYQPSISSNSVFVFPSKPHFKTA 252
K ++TS RY+A +QPS ++SVFVFPS P + A
Sbjct: 827 KITLTSARYAAEFQPSAVASSVFVFPSAPQAEKA 860
>gb|AAM20523.1| unknown protein [Arabidopsis thaliana] gi|23198110|gb|AAN15582.1|
unknown protein [Arabidopsis thaliana]
Length = 865
Score = 120 bits (300), Expect = 1e-26
Identities = 59/94 (62%), Positives = 72/94 (75%)
Frame = -2
Query: 533 YYIRILNQTPLLQEVKYSLGDSQSFVLCGYHNDTVYVLPKSEQILSYKLVPLASGMQQLP 354
Y +RI NQT LLQE K+ L D+QSFVL G H++TV VLPKSE +LSYKLVPL G QQLP
Sbjct: 767 YAVRICNQTQLLQEAKFGLADAQSFVLSGSHSNTVSVLPKSEHVLSYKLVPLTCGEQQLP 826
Query: 353 KFSMTSVRYSAAYQPSISSNSVFVFPSKPHFKTA 252
K ++TS RY+A +QPS ++SVFVFPS P + A
Sbjct: 827 KITLTSARYAAEFQPSAVASSVFVFPSAPQAEKA 860
>gb|AAH22185.1|AAH22185 hypothetical protein FLJ12716 [Homo sapiens]
Length = 654
Score = 47.4 bits (111), Expect = 1e-04
Identities = 22/63 (34%), Positives = 38/63 (59%)
Frame = -2
Query: 515 NQTPLLQEVKYSLGDSQSFVLCGYHNDTVYVLPKSEQILSYKLVPLASGMQQLPKFSMTS 336
N+T L+Q+V+ S+ S +F+ G + +LP +EQ + Y PL +G QQLP ++
Sbjct: 559 NKTDLVQDVEISVEPSDAFMFSGLKQIRLRILPGTEQEMLYNFYPLMAGYQQLPSLNINL 618
Query: 335 VRY 327
+R+
Sbjct: 619 LRF 621
>dbj|BAB14556.1| unnamed protein product [Homo sapiens]
Length = 388
Score = 47.4 bits (111), Expect = 1e-04
Identities = 22/63 (34%), Positives = 38/63 (59%)
Frame = -2
Query: 515 NQTPLLQEVKYSLGDSQSFVLCGYHNDTVYVLPKSEQILSYKLVPLASGMQQLPKFSMTS 336
N+T L+Q+V+ S+ S +F+ G + +LP +EQ + Y PL +G QQLP ++
Sbjct: 293 NKTDLVQDVEISVEPSDAFMFSGLKQIRLRILPGTEQEMLYNFYPLMAGYQQLPSLNINL 352
Query: 335 VRY 327
+R+
Sbjct: 353 LRF 355
>dbj|BAB14240.1| unnamed protein product [Homo sapiens]
Length = 294
Score = 47.4 bits (111), Expect = 1e-04
Identities = 22/63 (34%), Positives = 38/63 (59%)
Frame = -2
Query: 515 NQTPLLQEVKYSLGDSQSFVLCGYHNDTVYVLPKSEQILSYKLVPLASGMQQLPKFSMTS 336
N+T L+Q+V+ S+ S +F+ G + +LP +EQ + Y PL +G QQLP ++
Sbjct: 199 NKTDLVQDVEISVEPSDAFMFSGLKQIRLRILPGTEQEMLYNFYPLMAGYQQLPSLNINL 258
Query: 335 VRY 327
+R+
Sbjct: 259 LRF 261
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 465,862,847
Number of Sequences: 1393205
Number of extensions: 9947385
Number of successful extensions: 23083
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 22400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23069
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
