Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000600A_C01 KMC000600A_c01
(595 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T09581 probable high mobility group protein HMG1 - sword be... 168 5e-41
sp|P40620|HMGL_VICFA HMG1/2-like protein gi|541981|pir||S39556 h... 155 3e-37
sp|P40619|HMGL_PHANI HMG1/2-like protein gi|1085860|pir||S40302 ... 155 4e-37
pir||F86339 protein F2D10.18 [imported] - Arabidopsis thaliana g... 155 5e-37
ref|NP_564123.1| Expressed protein; protein id: At1g20693.1, sup... 154 1e-36
>pir||T09581 probable high mobility group protein HMG1 - sword bean
gi|1813329|dbj|BAA19156.1| HMG-1 [Canavalia gladiata]
Length = 141
Score = 168 bits (425), Expect = 5e-41
Identities = 81/114 (71%), Positives = 97/114 (85%)
Frame = -1
Query: 595 TKKAAKDPNKPKSPSSAFFVYMSEFRTQFKKDNPNNKSVAAVGKAAGSKWKSMTDAEKAP 416
+KKAAKDPNKPK P SAFFV+MSEFR Q+KK++P NKSVA VGKA G KWKS++DAEKAP
Sbjct: 27 SKKAAKDPNKPKRPPSAFFVFMSEFREQYKKEHPTNKSVAVVGKAGGDKWKSLSDAEKAP 86
Query: 415 YVARAEKAKEEYEKTLRAYNNGLAESKGSAEEEGSDKSKSEVNDDDEDDDEDDE 254
+VARAEK KEEY+K++ AYN L E K +EEE SDKSKSEVND+DED++ED +
Sbjct: 87 FVARAEKKKEEYDKSILAYNRKL-EGKNPSEEEKSDKSKSEVNDEDEDEEEDQD 139
>sp|P40620|HMGL_VICFA HMG1/2-like protein gi|541981|pir||S39556 high mobility group
protein HMG - fava bean
Length = 149
Score = 155 bits (393), Expect = 3e-37
Identities = 78/113 (69%), Positives = 93/113 (82%), Gaps = 1/113 (0%)
Frame = -1
Query: 589 KAAKDPNKPKSPSSAFFVYMSEFRTQFKKDNPNNKSVAAVGKAAGSKWKSMTDAEKAPYV 410
K KDPNKPK P SAFFV+M++FR Q+KKD+PNNKSVAAVGKA G +WKS+++ EKAPYV
Sbjct: 37 KEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYV 96
Query: 409 ARAEKAKEEYEKTLRAYNNGLAESKGSAEEEGSDKSKSEVNDDDED-DDEDDE 254
RA K KEEYE TL+AYN L +G +EEGSDKSKSEVND+DED +DE+DE
Sbjct: 97 DRALKKKEEYEITLQAYNKKL---EGKDDEEGSDKSKSEVNDEDEDEEDEEDE 146
>sp|P40619|HMGL_PHANI HMG1/2-like protein gi|1085860|pir||S40302 high mobility group
protein HMG-1 - Pharbitis nil
Length = 144
Score = 155 bits (392), Expect = 4e-37
Identities = 76/116 (65%), Positives = 92/116 (78%), Gaps = 3/116 (2%)
Frame = -1
Query: 595 TKKAAKDPNKPKSPSSAFFVYMSEFRTQFKKDNPNNKSVAAVGKAAGSKWKSMTDAEKAP 416
TKKA KDPNKPK P SAFFV+M +FR +K+ +PNNKSVA VGKA G KWK +T AEKAP
Sbjct: 26 TKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAP 85
Query: 415 YVARAEKAKEEYEKTLRAYNNGLAESKGSAEEEGSDKSKSEVNDDDEDDD---EDD 257
++++AEK K+EYEK L+AYN ++ G+AEEE SDKS+SEVNDDDED D EDD
Sbjct: 86 FISKAEKRKQEYEKNLQAYNK--KQAAGAAEEEESDKSRSEVNDDDEDQDGSGEDD 139
>pir||F86339 protein F2D10.18 [imported] - Arabidopsis thaliana
gi|8886929|gb|AAF80615.1|AC069251_8 F2D10.18
[Arabidopsis thaliana]
Length = 662
Score = 155 bits (391), Expect = 5e-37
Identities = 77/122 (63%), Positives = 94/122 (76%)
Frame = -1
Query: 592 KKAAKDPNKPKSPSSAFFVYMSEFRTQFKKDNPNNKSVAAVGKAAGSKWKSMTDAEKAPY 413
K AAKDPNKPK P+SAFFV+M +FR FKK+NP NKSVA VGKAAG KWKS++D+EKAPY
Sbjct: 406 KAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPY 465
Query: 412 VARAEKAKEEYEKTLRAYNNGLAESKGSAEEEGSDKSKSEVNDDDEDDDEDDE*NHVANE 233
VA+AEK K EYEK ++AYN L E G E+E SDKS SEVND+D+ +D +E + +
Sbjct: 466 VAKAEKRKVEYEKNIKAYNKKLEE--GPKEDEESDKSVSEVNDEDDAEDGSEEVSESIMK 523
Query: 232 GA 227
GA
Sbjct: 524 GA 525
Score = 149 bits (376), Expect = 3e-35
Identities = 72/113 (63%), Positives = 90/113 (78%)
Frame = -1
Query: 592 KKAAKDPNKPKSPSSAFFVYMSEFRTQFKKDNPNNKSVAAVGKAAGSKWKSMTDAEKAPY 413
K AAKDPNKPK PSSAFFV+M +FR +K+++P NKSVAAVGKA G KWKS++D+EKAPY
Sbjct: 547 KGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPY 606
Query: 412 VARAEKAKEEYEKTLRAYNNGLAESKGSAEEEGSDKSKSEVNDDDEDDDEDDE 254
VA+A+K K EYEK ++AYN L E G E+E SDKS SEVND+D+ +D +E
Sbjct: 607 VAKADKRKVEYEKNMKAYNKKLEE--GPKEDEESDKSVSEVNDEDDAEDGSEE 657
>ref|NP_564123.1| Expressed protein; protein id: At1g20693.1, supported by cDNA:
11615., supported by cDNA: gi_17104698 [Arabidopsis
thaliana] gi|11346368|pir||T51597 high mobility group
protein HMG-beta1 [validated] - Arabidopsis thaliana
gi|2832359|emb|CAA74401.1| HMG protein [Arabidopsis
thaliana] gi|13877971|gb|AAK44063.1|AF370248_1 unknown
protein [Arabidopsis thaliana]
gi|17104699|gb|AAL34238.1| unknown protein [Arabidopsis
thaliana] gi|21536964|gb|AAM61305.1| unknown
[Arabidopsis thaliana] gi|26452113|dbj|BAC43146.1|
unknown protein [Arabidopsis thaliana]
Length = 144
Score = 154 bits (388), Expect = 1e-36
Identities = 75/113 (66%), Positives = 90/113 (79%)
Frame = -1
Query: 592 KKAAKDPNKPKSPSSAFFVYMSEFRTQFKKDNPNNKSVAAVGKAAGSKWKSMTDAEKAPY 413
K AAKDPNKPK P+SAFFV+M +FR FKK+NP NKSVA VGKAAG KWKS++D+EKAPY
Sbjct: 29 KAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPY 88
Query: 412 VARAEKAKEEYEKTLRAYNNGLAESKGSAEEEGSDKSKSEVNDDDEDDDEDDE 254
VA+AEK K EYEK ++AYN L E G E+E SDKS SEVND+D+ +D +E
Sbjct: 89 VAKAEKRKVEYEKNIKAYNKKLEE--GPKEDEESDKSVSEVNDEDDAEDGSEE 139
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 445,477,448
Number of Sequences: 1393205
Number of extensions: 9041065
Number of successful extensions: 159803
Number of sequences better than 10.0: 2217
Number of HSP's better than 10.0 without gapping: 71845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116302
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
