Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000595A_C01 KMC000595A_c01
(715 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174119.1| sphingosine-1-phosphate lyase, putative; protei... 202 4e-51
gb|AAM62669.1| unknown [Arabidopsis thaliana] 202 4e-51
dbj|BAB62623.1| putative sphingosine-1-phosphate lyase [Oryza sa... 196 3e-49
ref|NP_003892.1| sphingosine-1-phosphate lyase 1; Sphingosine-1-... 96 5e-19
gb|AAD44755.1|AF144638_1 sphingosine-1-phosphate lyase [Homo sap... 96 5e-19
>ref|NP_174119.1| sphingosine-1-phosphate lyase, putative; protein id: At1g27980.1,
supported by cDNA: gi_13430507, supported by cDNA:
gi_21281190 [Arabidopsis thaliana]
gi|25331184|pir||C86405 probable sphingosine-1-phosphate
lyase [imported] - Arabidopsis thaliana
gi|12323004|gb|AAG51494.1|AC069471_25
sphingosine-1-phosphate lyase, putative [Arabidopsis
thaliana] gi|13430508|gb|AAK25876.1|AF360166_1 putative
sphingosine-1-phosphate lyase [Arabidopsis thaliana]
gi|21281191|gb|AAM44962.1| putative
sphingosine-1-phosphate lyase [Arabidopsis thaliana]
Length = 544
Score = 202 bits (514), Expect = 4e-51
Identities = 96/114 (84%), Positives = 105/114 (91%)
Frame = -3
Query: 713 KGIEEIAELFVVGRPDMTIVAFGSDVLDIFEVNDIMSSKGWHLNALQRPNSIHICVTLQL 534
+G+ EI ELFV+G+PDMTIVAFGS LDIFEVNDIMSSKGWHLNALQRPNSIHIC+TLQ
Sbjct: 428 EGVREIHELFVIGKPDMTIVAFGSKALDIFEVNDIMSSKGWHLNALQRPNSIHICITLQH 487
Query: 533 VPAVDDFLKDLKESVETVKKNPGPISGGLAPIYGAAGKMPDRGMVQELLVDFMD 372
VP VDDFL+DL+E+VETVK NPGPI+GGLAPIYGAAGKMPDRGMV ELLV FMD
Sbjct: 488 VPVVDDFLRDLREAVETVKANPGPITGGLAPIYGAAGKMPDRGMVNELLVSFMD 541
>gb|AAM62669.1| unknown [Arabidopsis thaliana]
Length = 125
Score = 202 bits (514), Expect = 4e-51
Identities = 96/114 (84%), Positives = 105/114 (91%)
Frame = -3
Query: 713 KGIEEIAELFVVGRPDMTIVAFGSDVLDIFEVNDIMSSKGWHLNALQRPNSIHICVTLQL 534
+G+ EI ELFV+G+PDMTIVAFGS LDIFEVNDIMSSKGWHLNALQRPNSIHIC+TLQ
Sbjct: 9 EGVREIHELFVIGKPDMTIVAFGSKALDIFEVNDIMSSKGWHLNALQRPNSIHICITLQH 68
Query: 533 VPAVDDFLKDLKESVETVKKNPGPISGGLAPIYGAAGKMPDRGMVQELLVDFMD 372
VP VDDFL+DL+E+VETVK NPGPI+GGLAPIYGAAGKMPDRGMV ELLV FMD
Sbjct: 69 VPVVDDFLRDLREAVETVKANPGPITGGLAPIYGAAGKMPDRGMVNELLVSFMD 122
>dbj|BAB62623.1| putative sphingosine-1-phosphate lyase [Oryza sativa (japonica
cultivar-group)] gi|15408847|dbj|BAB64236.1| putative
sphingosine-1-phosphate lyase [Oryza sativa (japonica
cultivar-group)]
Length = 557
Score = 196 bits (498), Expect = 3e-49
Identities = 92/117 (78%), Positives = 106/117 (89%)
Frame = -3
Query: 713 KGIEEIAELFVVGRPDMTIVAFGSDVLDIFEVNDIMSSKGWHLNALQRPNSIHICVTLQL 534
+GIE+I LFV+G+PDMT+VAFGSD +DIFEVNDIMSSKGWHLNALQRPNS+HICVTLQ
Sbjct: 441 RGIEDIPGLFVIGKPDMTVVAFGSDSVDIFEVNDIMSSKGWHLNALQRPNSLHICVTLQH 500
Query: 533 VPAVDDFLKDLKESVETVKKNPGPISGGLAPIYGAAGKMPDRGMVQELLVDFMDGTC 363
++FLKDLK+SV+TVK NPGPISGG APIYGAAGKMPDRGMV+ELLV+FMD +C
Sbjct: 501 TVIYEEFLKDLKDSVDTVKANPGPISGGRAPIYGAAGKMPDRGMVRELLVEFMDASC 557
>ref|NP_003892.1| sphingosine-1-phosphate lyase 1; Sphingosine-1-phosphate lyase
[Homo sapiens] gi|10129683|emb|CAA09590.2|
sphingosine-1-phosphate lyase [Homo sapiens]
Length = 568
Score = 95.9 bits (237), Expect = 5e-19
Identities = 49/114 (42%), Positives = 70/114 (60%), Gaps = 2/114 (1%)
Frame = -3
Query: 707 IEEIAELFVVGRPDMTIVAFGSDVLDIFEVNDIMSSKGWHLNALQRPNSIHICVTL--QL 534
+E I +FV G P ++++A GS DI+ ++++M++KGW+LN LQ P SIH C+TL
Sbjct: 434 LENIKGIFVFGNPQLSVIALGSRDFDIYRLSNLMTAKGWNLNQLQFPPSIHFCITLLHAR 493
Query: 533 VPAVDDFLKDLKESVETVKKNPGPISGGLAPIYGAAGKMPDRGMVQELLVDFMD 372
FLKD++ESV + KNP + G+ IYG A DR MV EL F+D
Sbjct: 494 KRVAIQFLKDIRESVTQIMKNPKAKTTGMGAIYGMAQTTVDRNMVAELSSVFLD 547
>gb|AAD44755.1|AF144638_1 sphingosine-1-phosphate lyase [Homo sapiens]
Length = 568
Score = 95.9 bits (237), Expect = 5e-19
Identities = 49/114 (42%), Positives = 70/114 (60%), Gaps = 2/114 (1%)
Frame = -3
Query: 707 IEEIAELFVVGRPDMTIVAFGSDVLDIFEVNDIMSSKGWHLNALQRPNSIHICVTL--QL 534
+E I +FV G P ++++A GS DI+ ++++M++KGW+LN LQ P SIH C+TL
Sbjct: 434 LENIKGIFVFGNPQLSVIALGSRDFDIYRLSNLMTAKGWNLNQLQFPPSIHFCITLLHAR 493
Query: 533 VPAVDDFLKDLKESVETVKKNPGPISGGLAPIYGAAGKMPDRGMVQELLVDFMD 372
FLKD++ESV + KNP + G+ IYG A DR MV EL F+D
Sbjct: 494 KRVAIQFLKDIRESVTQIMKNPKAKTTGMGAIYGMAQTTVDRNMVAELSSVFLD 547
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 622,692,843
Number of Sequences: 1393205
Number of extensions: 13683800
Number of successful extensions: 29485
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 28592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29460
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32936043699
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
