Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000593A_C01 KMC000593A_c01
(720 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190149.1| putative protein; protein id: At3g45630.1 [Arab... 76 5e-13
dbj|BAA97498.1| general negative transcription regulator-like [A... 74 3e-12
ref|NP_200825.1| putative protein; protein id: At5g60170.1 [Arab... 74 3e-12
emb|CAD37020.1| related to kinetoplast-associated protein KAP [N... 35 1.1
ref|XP_239627.1| hypothetical protein XP_239627 [Rattus norvegicus] 34 2.3
>ref|NP_190149.1| putative protein; protein id: At3g45630.1 [Arabidopsis thaliana]
gi|11357925|pir||T47503 hypothetical protein F9K21.210 -
Arabidopsis thaliana gi|6996266|emb|CAB75492.1| putative
protein [Arabidopsis thaliana]
Length = 989
Score = 75.9 bits (185), Expect = 5e-13
Identities = 34/61 (55%), Positives = 47/61 (76%), Gaps = 2/61 (3%)
Frame = -1
Query: 720 IMSNGQW-NGWNEVQSGSGLGVADLLRNERLGFN-KLYSGYDDSKYRLPTSGDLYHRTFG 547
++SNG W N WNE QSG+ LG+ LLRNER+GFN +YSG+++ K+R P GD Y+RT+G
Sbjct: 929 LLSNGHWDNKWNEPQSGNNLGITQLLRNERMGFNDNVYSGFEEPKFRRPGPGDPYNRTYG 988
Query: 546 M 544
+
Sbjct: 989 I 989
>dbj|BAA97498.1| general negative transcription regulator-like [Arabidopsis thaliana]
Length = 989
Score = 73.6 bits (179), Expect = 3e-12
Identities = 35/62 (56%), Positives = 51/62 (81%), Gaps = 3/62 (4%)
Frame = -1
Query: 720 IMSNGQ-WNGWNEVQSGSGLGVADLLRNERLGFN-KLY-SGYDDSKYRLPTSGDLYHRTF 550
I+SNG W+ WNE QS + +G+A+LLRNERLGFN LY +GY++ K+R+P+ GD+Y+RT+
Sbjct: 928 ILSNGHHWDKWNEGQSVNNIGMAELLRNERLGFNGSLYNNGYEEPKFRIPSPGDVYNRTY 987
Query: 549 GM 544
G+
Sbjct: 988 GI 989
>ref|NP_200825.1| putative protein; protein id: At5g60170.1 [Arabidopsis thaliana]
Length = 944
Score = 73.6 bits (179), Expect = 3e-12
Identities = 35/62 (56%), Positives = 51/62 (81%), Gaps = 3/62 (4%)
Frame = -1
Query: 720 IMSNGQ-WNGWNEVQSGSGLGVADLLRNERLGFN-KLY-SGYDDSKYRLPTSGDLYHRTF 550
I+SNG W+ WNE QS + +G+A+LLRNERLGFN LY +GY++ K+R+P+ GD+Y+RT+
Sbjct: 883 ILSNGHHWDKWNEGQSVNNIGMAELLRNERLGFNGSLYNNGYEEPKFRIPSPGDVYNRTY 942
Query: 549 GM 544
G+
Sbjct: 943 GI 944
>emb|CAD37020.1| related to kinetoplast-associated protein KAP [Neurospora crassa]
gi|28920595|gb|EAA29957.1| predicted protein [Neurospora
crassa]
Length = 899
Score = 35.0 bits (79), Expect = 1.1
Identities = 19/52 (36%), Positives = 24/52 (45%), Gaps = 2/52 (3%)
Frame = +3
Query: 567 DHQKWADDIWNRHIPSITC*IQVFHSSKDQPHPDHSHSA--PHSTHSIVHWT 716
D + DD W+ H I +++ PHP H HS PHS HS H T
Sbjct: 53 DDESTEDDHWDDHYDEIDPSDSASATAEYYPHPHHGHSPLPPHSPHSRSHST 104
>ref|XP_239627.1| hypothetical protein XP_239627 [Rattus norvegicus]
Length = 108
Score = 33.9 bits (76), Expect = 2.3
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Frame = +2
Query: 599 SSYPEYNLL-----NPSLSFLKRSATPRPLPLCTSFHPFH---CPL 712
SS+P++++ + S L S+TP P P C S HP H CPL
Sbjct: 58 SSFPDFSIFGLAWGSSSRGHLSLSSTPSPFPSCPSPHPAHGLGCPL 103
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 706,812,694
Number of Sequences: 1393205
Number of extensions: 16454489
Number of successful extensions: 42041
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 39592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41961
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33499052993
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
