Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000591A_C01 KMC000591A_c01
(441 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA33527.1| hypothetical protein [Neurospora crassa] 32 1.8
ref|NP_505215.1| Cystatin domain and Papain family cysteine prot... 32 1.8
dbj|BAB89232.1| salt-inducible protein-like [Oryza sativa (japon... 32 2.3
gb|AAC58525.1| Lef9 [Lymantria dispar nucleopolyhedrovirus] 32 2.3
ref|NP_047701.1| late expression factor 9 [Lymantria dispar nucl... 32 2.3
>gb|EAA33527.1| hypothetical protein [Neurospora crassa]
Length = 658
Score = 32.0 bits (71), Expect = 1.8
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = -2
Query: 170 QQQQQGLSLSL*EKLNGDSSSTDHTHTH*PIPVTSSPPSSS 48
QQQQQ ++ LNG SSS TH P+P +S+PP +S
Sbjct: 526 QQQQQQPRVAFGGYLNGRSSSRRPTH---PLPYSSAPPLAS 563
>ref|NP_505215.1| Cystatin domain and Papain family cysteine protease precursor
[Caenorhabditis elegans] gi|7503178|pir||T31871
hypothetical protein F41E6.6 - Caenorhabditis elegans
gi|2315454|gb|AAB65956.1| Hypothetical protein F41E6.6
[Caenorhabditis elegans]
Length = 498
Score = 32.0 bits (71), Expect = 1.8
Identities = 21/59 (35%), Positives = 26/59 (43%), Gaps = 8/59 (13%)
Frame = +1
Query: 109 EEESPFSFSQRER--------ERPCCCCWMMDASWPLCFSTTMNVMGGWFLTLGFLLIL 261
EE+ P SF RE+ + C CW FSTT NV G WF+ L+ L
Sbjct: 261 EEDLPESFDWREKGAVTQVKNQGNCGSCW--------AFSTTGNVEGAWFIAKNKLVSL 311
>dbj|BAB89232.1| salt-inducible protein-like [Oryza sativa (japonica
cultivar-group)]
Length = 596
Score = 31.6 bits (70), Expect = 2.3
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -1
Query: 114 LLHRSHSHPLTDTCNLITTFLFPIPKPTQPSPSFLFF 4
+L HSHPL FL +P P QPSP+ L F
Sbjct: 65 VLRAGHSHPLPTL-----RFLLALPPPAQPSPTHLAF 96
>gb|AAC58525.1| Lef9 [Lymantria dispar nucleopolyhedrovirus]
Length = 496
Score = 31.6 bits (70), Expect = 2.3
Identities = 17/45 (37%), Positives = 25/45 (54%)
Frame = -1
Query: 180 IHHPTTTTRSLSLSLRKAKW*FLLHRSHSHPLTDTCNLITTFLFP 46
I+H TT +++ L K + ++S S PL D C L + FLFP
Sbjct: 447 IYHNTTVLQNVYLKNDK-----ICYKSDSRPLADVCALPSEFLFP 486
>ref|NP_047701.1| late expression factor 9 [Lymantria dispar nucleopolyhedrovirus]
gi|7460655|pir||T30412 late expression factor 9 -
Lymantria dispar nuclear polyhedrosis virus
gi|3822299|gb|AAC70250.1|AAC70250 late expression factor
9 [Lymantria dispar nucleopolyhedrovirus]
Length = 496
Score = 31.6 bits (70), Expect = 2.3
Identities = 17/45 (37%), Positives = 25/45 (54%)
Frame = -1
Query: 180 IHHPTTTTRSLSLSLRKAKW*FLLHRSHSHPLTDTCNLITTFLFP 46
I+H TT +++ L K + ++S S PL D C L + FLFP
Sbjct: 447 IYHNTTVLQNVYLKNDK-----ICYKSDSRPLADVCALPSEFLFP 486
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 380,951,983
Number of Sequences: 1393205
Number of extensions: 8087221
Number of successful extensions: 26980
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 25422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26925
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 6689237688
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
