Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000588A_C01 KMC000588A_c01
(520 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_680171.1| similar to reverse transcriptase, putative; pro... 41 0.009
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ... 40 0.021
gb|AAO17010.1| Putative 50S ribosomal protein L10 [Oryza sativa ... 40 0.021
gb|AAK39575.1|AC025296_10 putative reverse transcriptase [Oryza ... 39 0.036
gb|AAM54146.1|AC104616_5 putative reverse transcriptase. [Oryza ... 39 0.036
>ref|NP_680171.1| similar to reverse transcriptase, putative; protein id: At5g17725.1
[Arabidopsis thaliana]
Length = 721
Score = 40.8 bits (94), Expect = 0.009
Identities = 33/106 (31%), Positives = 51/106 (47%), Gaps = 6/106 (5%)
Frame = -1
Query: 457 ATASSKW------PRTVSVATSEAMALRWGLQLSLELGFFEVEVEIDNQVVVNSWKGTKK 296
AT ++KW P VS +EA AL W ++ LG EV E D+QV+V + +
Sbjct: 589 ATGAAKWVGSKAYPSLVSSLEAEATALTWAMRCLDNLGVTEVVFETDSQVLVKALNEPEM 648
Query: 295 HVSYLANVIADVVRISQCFRFFSLAYVPRLSHLAADYLAQFALSDY 158
L++ I D+ ++ F S + R ++ AD LA A S +
Sbjct: 649 W-PRLSSYIDDIHGTTRRFLKPSFRFQRREANRCADLLASKAFSSF 693
>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)]
Length = 1382
Score = 39.7 bits (91), Expect = 0.021
Identities = 28/88 (31%), Positives = 46/88 (51%)
Frame = -1
Query: 412 SEAMALRWGLQLSLELGFFEVEVEIDNQVVVNSWKGTKKHVSYLANVIADVVRISQCFRF 233
+EA+A+R L L+ E G + + D V+ + + + S + VI D+ +++ F
Sbjct: 1277 AEALAIRRALGLAKEEGLEHIVMASDCLTVIRRIQTSGRDRSGVGCVIEDIKKLASTFVL 1336
Query: 232 FSLAYVPRLSHLAADYLAQFALSDYCFV 149
S +V RLS+LAA LA+ A C V
Sbjct: 1337 CSFMHVNRLSNLAAHSLARNAELSTCTV 1364
>gb|AAO17010.1| Putative 50S ribosomal protein L10 [Oryza sativa (japonica
cultivar-group)]
Length = 466
Score = 39.7 bits (91), Expect = 0.021
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = -1
Query: 412 SEAMALRWGLQLSLELGFFEVEVEIDNQVVVNSWKGTKKHVSYLANVIADVVR-ISQCFR 236
+E A ++ + E G VE+E D+ ++ N+ + ++S + VI ++ I+ CF
Sbjct: 350 AELFASAVAIKTAKEKGMARVELETDSLMLCNALQSNSFNLSVMGGVILEIKHVIASCFH 409
Query: 235 FFSLAYVPRLSHLAADYLA 179
FS++Y PR + A LA
Sbjct: 410 SFSVSYCPRNCNKVAHELA 428
>gb|AAK39575.1|AC025296_10 putative reverse transcriptase [Oryza sativa]
Length = 791
Score = 38.9 bits (89), Expect = 0.036
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Frame = -1
Query: 463 VLATASSKWPRTVSVATSEAMALRWGLQLSLELGFFEVEVEIDNQVVVNSWKGTKKHVSY 284
++ T+ R + SE A GL+L++ ++VE D VV +GT + S
Sbjct: 666 IIFTSCKPLERCNNPLESELRACVEGLKLAIHWTLLPIQVETDCASVVQLLQGTGRDFSV 725
Query: 283 LANVIADVVRISQCFRFFSLAYVPRLS-----HLA----ADYLAQFALSDYC 155
LAN+I + + R S+ + R HLA AD+LA F L + C
Sbjct: 726 LANIIHEARHLLVGERVISIKKICRSQNCISHHLANTARADFLAGFWLGESC 777
>gb|AAM54146.1|AC104616_5 putative reverse transcriptase. [Oryza sativa (japonica
cultivar-group)]
Length = 493
Score = 38.9 bits (89), Expect = 0.036
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Frame = -1
Query: 463 VLATASSKWPRTVSVATSEAMALRWGLQLSLELGFFEVEVEIDNQVVVNSWKGTKKHVSY 284
++ T+ R + SE A GL+L++ ++VE D VV +GT + S
Sbjct: 368 IIFTSCKPLERCNNPLESELRACVEGLKLAIHWTLLPIQVETDCASVVQLLQGTGRDFSV 427
Query: 283 LANVIADVVRISQCFRFFSLAYVPRLS-----HLA----ADYLAQFALSDYC 155
LAN+I + + R S+ + R HLA AD+LA F L + C
Sbjct: 428 LANIIHEARHLLVGERVISIKKICRSQNCISHHLANTARADFLAGFWLGESC 479
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 434,168,086
Number of Sequences: 1393205
Number of extensions: 9108426
Number of successful extensions: 36780
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 35323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36716
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
