Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000584A_C01 KMC000584A_c01
(626 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198117.1| PWWP domain protein; protein id: At5g27650.1 [A... 121 7e-27
ref|NP_187194.1| PWWP domain protein; protein id: At3g05430.1 [A... 120 1e-26
ref|NP_198850.1| PWWP domain protein; protein id: At5g40340.1 [A... 78 1e-13
ref|NP_195915.1| PWWP domain protein; protein id: At5g02950.1 [A... 72 5e-12
ref|NP_187578.1| PWWP domain protein; protein id: At3g09670.1 [A... 68 9e-11
>ref|NP_198117.1| PWWP domain protein; protein id: At5g27650.1 [Arabidopsis thaliana]
Length = 1063
Score = 121 bits (304), Expect = 7e-27
Identities = 58/91 (63%), Positives = 66/91 (71%)
Frame = +3
Query: 354 STVDHSEPSESNGSERNGGVSTGFEVGDMVWAKVKSHPWWPRHIYNEAFASAAVRRSKRE 533
S D SE GS + +S GFEVGD+VW KVKSHPWWP HI+NEAFAS +VRR +R
Sbjct: 139 SEFDDYVASEKMGSGVSRALSYGFEVGDLVWGKVKSHPWWPGHIFNEAFASPSVRRMRRI 198
Query: 534 GLVLVAFFGDSSYGWFESGELIPFDENFAEK 626
VLVAFFGDSSYGWF+ ELIPF+ N EK
Sbjct: 199 DHVLVAFFGDSSYGWFDPAELIPFEPNLEEK 229
>ref|NP_187194.1| PWWP domain protein; protein id: At3g05430.1 [Arabidopsis thaliana]
gi|7596768|gb|AAF64539.1| hypothetical protein
[Arabidopsis thaliana]
Length = 965
Score = 120 bits (301), Expect = 1e-26
Identities = 65/147 (44%), Positives = 85/147 (57%), Gaps = 16/147 (10%)
Frame = +3
Query: 234 GDANPGNQVTSSEVSAHISQLP--VTTSPEHF-RVCSELAPPS-------------STVD 365
G+ + G++V++SE ++ + S F +C+E S D
Sbjct: 54 GNVDLGSRVSNSETEPRFCEMKREIRDSDHRFYELCNESGEKKMEKRRVPDYKSFLSEFD 113
Query: 366 HSEPSESNGSERNGGVSTGFEVGDMVWAKVKSHPWWPRHIYNEAFASAAVRRSKREGLVL 545
E GS + +S GFEVGDMVW KVKSHPWWP I+NEAFAS +VRR K+ G VL
Sbjct: 114 DYVAREKMGSRNSKALSYGFEVGDMVWGKVKSHPWWPGQIFNEAFASPSVRRVKKMGYVL 173
Query: 546 VAFFGDSSYGWFESGELIPFDENFAEK 626
VAFFGD+SYGWF+ ELIPF+ + EK
Sbjct: 174 VAFFGDNSYGWFDPAELIPFEPHVKEK 200
>ref|NP_198850.1| PWWP domain protein; protein id: At5g40340.1 [Arabidopsis thaliana]
gi|10178144|dbj|BAB11589.1| gene_id:MPO12.6~unknown
protein [Arabidopsis thaliana]
Length = 1008
Score = 77.8 bits (190), Expect = 1e-13
Identities = 35/84 (41%), Positives = 49/84 (57%)
Frame = +3
Query: 372 EPSESNGSERNGGVSTGFEVGDMVWAKVKSHPWWPRHIYNEAFASAAVRRSKREGLVLVA 551
E E E G+ VGD VW K+K+HPWWP IY+ + AS + K++G +LVA
Sbjct: 108 EEEEEEEEEEEEEEEHGYCVGDFVWGKIKNHPWWPGQIYDPSDASDLALKIKQKGKLLVA 167
Query: 552 FFGDSSYGWFESGELIPFDENFAE 623
FGD ++ W + +L PF E+F E
Sbjct: 168 CFGDGTFAWCGASQLKPFAESFKE 191
>ref|NP_195915.1| PWWP domain protein; protein id: At5g02950.1 [Arabidopsis thaliana]
gi|11357914|pir||T48316 hypothetical protein F9G14.260 -
Arabidopsis thaliana gi|7413570|emb|CAB86049.1| putative
protein [Arabidopsis thaliana]
Length = 632
Score = 72.4 bits (176), Expect = 5e-12
Identities = 27/63 (42%), Positives = 47/63 (73%)
Frame = +3
Query: 435 DMVWAKVKSHPWWPRHIYNEAFASAAVRRSKREGLVLVAFFGDSSYGWFESGELIPFDEN 614
D+VWAK++S+PWWP +++++ AS A R ++G VLVA+FGD ++ W + ++ PF +N
Sbjct: 99 DLVWAKLRSYPWWPGLVFDKSVASKAAMRHFKKGNVLVAYFGDCTFAWNNASQIKPFHQN 158
Query: 615 FAE 623
F++
Sbjct: 159 FSQ 161
>ref|NP_187578.1| PWWP domain protein; protein id: At3g09670.1 [Arabidopsis thaliana]
gi|6682245|gb|AAF23297.1|AC016661_22 hypothetical
protein [Arabidopsis thaliana]
Length = 726
Score = 68.2 bits (165), Expect = 9e-11
Identities = 24/63 (38%), Positives = 44/63 (69%)
Frame = +3
Query: 435 DMVWAKVKSHPWWPRHIYNEAFASAAVRRSKREGLVLVAFFGDSSYGWFESGELIPFDEN 614
D+VWAKV+SHPWWP +++ + A+ ++ ++G LV +FGD ++ W E+ + PF ++
Sbjct: 201 DLVWAKVRSHPWWPGQVFDASAATDKAKKHFKKGSFLVTYFGDCTFAWNEASRIKPFRQH 260
Query: 615 FAE 623
F++
Sbjct: 261 FSQ 263
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 622,711,537
Number of Sequences: 1393205
Number of extensions: 15993155
Number of successful extensions: 75361
Number of sequences better than 10.0: 240
Number of HSP's better than 10.0 without gapping: 56142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72254
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
