Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000576A_C01 KMC000576A_c01
(534 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T13853 hypothetical protein X - fruit fly (Drosophila melan... 32 3.6
ref|NP_572302.1| CG3585-PA [Drosophila melanogaster] gi|22831800... 32 3.6
gb|AAF05703.1|AF190403_1 homeodomain transcription factor Prospe... 32 4.8
ref|NP_731565.2| prospero CG17228-PA gi|28381244|gb|AAN13501.2| ... 32 4.8
dbj|BAA01464.1| prospero [Drosophila melanogaster] 32 4.8
>pir||T13853 hypothetical protein X - fruit fly (Drosophila melanogaster)
gi|1279384|emb|CAA65830.1| X [Drosophila melanogaster]
Length = 3429
Score = 32.3 bits (72), Expect = 3.6
Identities = 22/62 (35%), Positives = 28/62 (44%), Gaps = 2/62 (3%)
Frame = -2
Query: 506 NSGTGDSSGSQSQQIGDGVREEKHSNGVVA-HGSSSHSTDKEHTQSLPMNV*KSY-IATS 333
+ G GD G Q G G R S G A H SSS + +LP+NV S + T
Sbjct: 705 DDGDGDREGDADQDEGGGDRSAAASGGGAAEHSSSSQDSAATGASALPLNVSPSVSMVTK 764
Query: 332 HN 327
H+
Sbjct: 765 HS 766
>ref|NP_572302.1| CG3585-PA [Drosophila melanogaster] gi|22831800|gb|AAF46135.2|
CG3585-PA [Drosophila melanogaster]
Length = 3419
Score = 32.3 bits (72), Expect = 3.6
Identities = 22/62 (35%), Positives = 28/62 (44%), Gaps = 2/62 (3%)
Frame = -2
Query: 506 NSGTGDSSGSQSQQIGDGVREEKHSNGVVA-HGSSSHSTDKEHTQSLPMNV*KSY-IATS 333
+ G GD G Q G G R S G A H SSS + +LP+NV S + T
Sbjct: 698 DDGDGDREGDADQDEGGGDRSAAASGGGAAEHSSSSQDSAATGASALPLNVSPSVSMVTK 757
Query: 332 HN 327
H+
Sbjct: 758 HS 759
>gb|AAF05703.1|AF190403_1 homeodomain transcription factor Prospero [Drosophila melanogaster]
Length = 1403
Score = 32.0 bits (71), Expect = 4.8
Identities = 15/46 (32%), Positives = 24/46 (51%)
Frame = -2
Query: 521 HQTVLNSGTGDSSGSQSQQIGDGVREEKHSNGVVAHGSSSHSTDKE 384
H + +S +G SGS S DG K S+ + +HG+ + D+E
Sbjct: 320 HGSSHSSRSGSGSGSHSSMASDGSLRRKSSDSLDSHGAQDDAQDEE 365
>ref|NP_731565.2| prospero CG17228-PA gi|28381244|gb|AAN13501.2| CG17228-PA
[Drosophila melanogaster]
Length = 1535
Score = 32.0 bits (71), Expect = 4.8
Identities = 15/46 (32%), Positives = 24/46 (51%)
Frame = -2
Query: 521 HQTVLNSGTGDSSGSQSQQIGDGVREEKHSNGVVAHGSSSHSTDKE 384
H + +S +G SGS S DG K S+ + +HG+ + D+E
Sbjct: 320 HGSSHSSRSGSGSGSHSSMASDGSLRRKSSDSLDSHGAQDDAQDEE 365
>dbj|BAA01464.1| prospero [Drosophila melanogaster]
Length = 1403
Score = 32.0 bits (71), Expect = 4.8
Identities = 15/46 (32%), Positives = 24/46 (51%)
Frame = -2
Query: 521 HQTVLNSGTGDSSGSQSQQIGDGVREEKHSNGVVAHGSSSHSTDKE 384
H + +S +G SGS S DG K S+ + +HG+ + D+E
Sbjct: 320 HGSSHSSRSGSGSGSHSSMASDGSLRRKSSDSLDSHGAQDDAQDEE 365
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 449,847,470
Number of Sequences: 1393205
Number of extensions: 9743068
Number of successful extensions: 21447
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 20693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21413
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
